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Aliases for GC09M068700 Gene

Subcategory (RNA class) for GC09M068700 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for GC09M068700 Gene

No Aliases found

No data available for External Ids for GC09M068700 Gene

Summaries for GC09M068700 Gene

GeneCards Summary for GC09M068700 Gene

GC09M068700 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC09M068700 Gene

  • RNase_MRP_RNA: The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs.

View fRNAdb secondary structures for GC09M068700

Additional gene information for GC09M068700 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M068700 Gene

Genomics for GC09M068700 Gene

GeneHancer (GH) Regulatory Elements for GC09M068700 Gene

Promoters and enhancers for GC09M068700 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I068698 Enhancer 0.7 ENCODE 550.8 +1.6 1643 0.9 LEF1 E4F1 ZBTB40 ZNF316 ZNF766 VEZF1 NFE2 MAFK SMARCE1 MAFG GC09M068700 FAM122A PRKACG PIP5K1B GC09P068677
GH09I068689 Enhancer 0.8 ENCODE dbSUPER 0.4 +10.5 10480 0.8 SMARCE1 ESRRA USF1 CBFA2T3 THRB MITF FOSL1 IKZF1 KDM1A TRIM28 FAM122A PRKACG LOC100421655 GC09M068700 GC09P068677
GH09I068688 Enhancer 0.4 dbSUPER 0.4 +11.7 11667 0.7 ATF4 ZNF24 FAM122A PRKACG ENSG00000236733 TMEM252 ENSG00000226337 LOC100421655 GC09M068700 GC09P068677
GH09I068692 Enhancer 0.2 dbSUPER 0.4 +8.3 8252 0.7 FAM122A PRKACG ENSG00000236733 GC09M068700 GC09P068677
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC09M068700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC09M068700 Gene

Genomic Locations for GC09M068700 Gene
chr9:68,700,578-68,700,850
(GRCh38/hg38)
Size:
273 bases
Orientation:
Minus strand

Genomic View for GC09M068700 Gene

Genes around GC09M068700 on UCSC Golden Path with GeneCards custom track

GC09M068700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M068700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC09M068700 Gene

ORGUL Member Location for GC09M068700 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M068700 Gene

Proteins for GC09M068700 Gene

Post-translational modifications for GC09M068700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M068700 Gene

Domains & Families for GC09M068700 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M068700 Gene

Function for GC09M068700 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M068700 Gene

Localization for GC09M068700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC09M068700 Gene

Pathways & Interactions for GC09M068700 Gene

SuperPathways for GC09M068700 Gene

No Data Available

Interacting Proteins for GC09M068700 Gene

Gene Ontology (GO) - Biological Process for GC09M068700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M068700 Gene

Drugs & Compounds for GC09M068700 Gene

No Compound Related Data Available

Transcripts for GC09M068700 Gene

fRNAdb Secondary structures for GC09M068700 Gene

  • FR119392
  • FR375881
  • FR260307
  • FR215892
  • FR022570

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M068700 Gene

No ASD Table

Relevant External Links for GC09M068700 Gene

GeneLoc Exon Structure for
GC09M068700

No data available for mRNA/cDNA for GC09M068700 Gene

Expression for GC09M068700 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M068700 Gene

Orthologs for GC09M068700 Gene

No data available for Orthologs and Evolution for GC09M068700 Gene

Paralogs for GC09M068700 Gene

No data available for Paralogs for GC09M068700 Gene

Variants for GC09M068700 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC09M068700 Gene

Disorders for GC09M068700 Gene

No disorders were found for GC09M068700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M068700 Gene

Publications for GC09M068700 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Phylogenetic analysis of the structure of RNase MRP RNA in yeasts. (PMID: 12088147) Li X … Lindahl L (RNA (New York, N.Y.) 2002) 1
  4. Mutations in the RNA component of RNase MRP cause a pleiotropic human disease, cartilage-hair hypoplasia. (PMID: 11207361) Ridanpää M … de la Chapelle A (Cell 2001) 1
  5. Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison. (PMID: 7678563) Schmitt ME … Clayton DA (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 1993) 1

Products for GC09M068700 Gene

Sources for GC09M068700 Gene

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