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Aliases for GC09M021524 Gene

Subcategory (RNA class) for GC09M021524 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC09M021524 Gene

No Aliases found

ORGUL Members for GC09M021524 Gene

No data available for External Ids for GC09M021524 Gene

Summaries for GC09M021524 Gene

GeneCards Summary for GC09M021524 Gene

GC09M021524 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC09M021524 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M021524 Gene

Genomics for GC09M021524 Gene

Regulatory Elements for GC09M021524 Gene

Enhancers for GC09M021524 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G021547 1.5 Ensembl ENCODE dbSUPER 0.3 -30.6 -30599 14.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 GATA2 ZNF302 FOS SP3 MIR31 IFNE MIR31HG GC09M021524
GH09G021542 0.8 ENCODE dbSUPER 0.4 -19.0 -18979 1.5 MAFF GATA2 TEAD4 MAFK MIR31 IFNE GC09M021524 MIR31HG
GH09G021526 0.4 dbSUPER 0.7 -3.7 -3658 2.5 CTCF POLR2A GC09M021524 MIR31HG
GH09G021531 0.4 dbSUPER 0.4 -8.6 -8570 2.7 MAFK GC09M021524 MIR31HG
GH09G021535 0.2 dbSUPER 0.4 -11.8 -11751 1.3 MIR31 GC09M021524 MIR31HG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M021524 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M021524 Gene

Chromosome:
9
Start:
21,524,306 bp from pter
End:
21,524,385 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for GC09M021524 Gene

Genes around GC09M021524 on UCSC Golden Path with GeneCards custom track

GC09M021524 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M021524 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M021524 Gene

Proteins for GC09M021524 Gene

Post-translational modifications for GC09M021524 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M021524 Gene

Domains & Families for GC09M021524 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M021524 Gene

Function for GC09M021524 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M021524 Gene

Localization for GC09M021524 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M021524 Gene

Pathways & Interactions for GC09M021524 Gene

SuperPathways for GC09M021524 Gene

No Data Available

Interacting Proteins for GC09M021524 Gene

Gene Ontology (GO) - Biological Process for GC09M021524 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M021524 Gene

Drugs & Compounds for GC09M021524 Gene

No Compound Related Data Available

Transcripts for GC09M021524 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M021524 Gene

No ASD Table

Relevant External Links for GC09M021524 Gene

GeneLoc Exon Structure for
GC09M021524

No data available for mRNA/cDNA for GC09M021524 Gene

Expression for GC09M021524 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M021524 Gene

Orthologs for GC09M021524 Gene

No data available for Orthologs and Evolution for GC09M021524 Gene

Paralogs for GC09M021524 Gene

No data available for Paralogs for GC09M021524 Gene

Variants for GC09M021524 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M021524 Gene

Disorders for GC09M021524 Gene

No disorders were found for GC09M021524 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M021524 Gene

Publications for GC09M021524 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S. … Bozzoni I. (Mol. Cell. Biol. 2002) 1
  3. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-LA!szlA^ Z. … Kiss T. (Cell 1996) 1
  4. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 1

Products for GC09M021524 Gene

Sources for GC09M021524 Gene

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