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Aliases for GC09M002162 Gene

Subcategory (RNA class) for GC09M002162 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC09M002162 Gene

No Aliases found

ORGUL Members for GC09M002162 Gene

No data available for External Ids for GC09M002162 Gene

Summaries for GC09M002162 Gene

GeneCards Summary for GC09M002162 Gene

GC09M002162 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC09M002162 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC09M002162 Gene

Genomics for GC09M002162 Gene

Regulatory Elements for GC09M002162 Gene

Enhancers for GC09M002162 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G002155 2.1 ENCODE dbSUPER 0.7 +4.4 4395 5.6 WRNIP1 SIN3A ZBTB40 RELB ETV6 IKZF2 ZNF362 ZBTB11 CEBPB TBX21 SMARCA2 GC09M002162 RNU2-25P GC09P002100 GC09P002102 GC09P002101
GH09G002179 0.6 ENCODE 0.4 -17.4 -17363 1.7 CTCF RFX1 TEAD4 SMC3 EP300 RAD21 GC09M002192 GC09M002162 RNU2-25P
GH09G002146 0.6 ENCODE 0.4 +16.1 16058 0.3 CTCF RFX1 RFX3 SMC3 BMI1 RAD21 RNU2-25P GC09M002162 GC09P002101 GC09P002102 GC09P002100
GH09G002124 0.8 Ensembl ENCODE 0.3 +36.6 36574 2.8 MLLT1 IRF1 TBX21 ZBTB40 PRDM1 SMARCA2 RNU2-25P GC09P002100 GC09P002101 GC09P002102 GC09M002162
GH09G002181 0.5 ENCODE 0.4 -19.2 -19180 1.3 CTCF HDAC2 TEAD4 SMC3 RAD21 SMARCA2 GC09M002192 RNU2-25P GC09M002162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC09M002162 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC09M002162 Gene

Chromosome:
9
Start:
2,162,762 bp from pter
End:
2,162,953 bp from pter
Size:
192 bases
Orientation:
Minus strand

Genomic View for GC09M002162 Gene

Genes around GC09M002162 on UCSC Golden Path with GeneCards custom track

GC09M002162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC09M002162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC09M002162 Gene

Proteins for GC09M002162 Gene

Post-translational modifications for GC09M002162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC09M002162 Gene

Domains & Families for GC09M002162 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC09M002162 Gene

Function for GC09M002162 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC09M002162 Gene

Localization for GC09M002162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC09M002162 Gene

Pathways & Interactions for GC09M002162 Gene

SuperPathways for GC09M002162 Gene

No Data Available

Interacting Proteins for GC09M002162 Gene

Gene Ontology (GO) - Biological Process for GC09M002162 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC09M002162 Gene

Drugs & Compounds for GC09M002162 Gene

No Compound Related Data Available

Transcripts for GC09M002162 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC09M002162 Gene

No ASD Table

Relevant External Links for GC09M002162 Gene

GeneLoc Exon Structure for
GC09M002162

No data available for mRNA/cDNA for GC09M002162 Gene

Expression for GC09M002162 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC09M002162 Gene

Orthologs for GC09M002162 Gene

No data available for Orthologs and Evolution for GC09M002162 Gene

Paralogs for GC09M002162 Gene

No data available for Paralogs for GC09M002162 Gene

Variants for GC09M002162 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC09M002162 Gene

Disorders for GC09M002162 Gene

No disorders were found for GC09M002162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC09M002162 Gene

Publications for GC09M002162 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund J.A. … Schultz S.C. (RNA 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby M.I. … Greenbaum N.L. (RNA 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC09M002162 Gene

Sources for GC09M002162 Gene

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