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Aliases for GC08P128000 Gene

Subcategory (RNA class) for GC08P128000 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08P128000 Gene

No Aliases found

ORGUL Members for GC08P128000 Gene

No data available for External Ids for GC08P128000 Gene

Summaries for GC08P128000 Gene

GeneCards Summary for GC08P128000 Gene

GC08P128000 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08P128000 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P128000 Gene

Genomics for GC08P128000 Gene

Regulatory Elements for GC08P128000 Gene

Enhancers for GC08P128000 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G127992 1.4 Ensembl ENCODE dbSUPER 0.7 -4.2 -4171 5.4 HDAC1 HDGF PKNOX1 ATF1 NFIB BMI1 ZBTB7B EGR1 GATA2 RELB PVT1 GC08P128000 GC08P127985
GH08G127986 1.2 FANTOM5 ENCODE dbSUPER 0.4 -11.3 -11265 2.1 BCOR ESRRA MAFG ZMYM3 CEBPG EBF1 RELA GATA3 ZNF316 MAFF PVT1 MIR1205 RNU4-25P TMEM75 MIR1207 MIR1204 GC08P127985 GC08P128000
GH08G127990 0.8 FANTOM5 dbSUPER 0.4 -8.3 -8258 0.4 MTA2 CEBPB PVT1 TMEM75 MIR1204 GC08P127985 GC08P128000
GH08G127991 0.5 ENCODE dbSUPER 0.4 -7.3 -7311 0.1 GC08P127985 GC08P128000
GH08G127985 0.4 dbSUPER 0.4 -13.4 -13388 0.6 ZNF512 RNU4-25P MIR1207 TMEM75 MIR1204 PVT1 GC08P127985 GC08P128000
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P128000 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P128000 Gene

Chromosome:
8
Start:
127,999,130 bp from pter
End:
127,999,294 bp from pter
Size:
165 bases
Orientation:
Plus strand

Genomic View for GC08P128000 Gene

Genes around GC08P128000 on UCSC Golden Path with GeneCards custom track

GC08P128000 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P128000 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P128000 Gene

Proteins for GC08P128000 Gene

Post-translational modifications for GC08P128000 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P128000 Gene

Domains & Families for GC08P128000 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P128000 Gene

Function for GC08P128000 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P128000 Gene

Localization for GC08P128000 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P128000 Gene

Pathways & Interactions for GC08P128000 Gene

SuperPathways for GC08P128000 Gene

No Data Available

Interacting Proteins for GC08P128000 Gene

Gene Ontology (GO) - Biological Process for GC08P128000 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P128000 Gene

Drugs & Compounds for GC08P128000 Gene

No Compound Related Data Available

Transcripts for GC08P128000 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P128000 Gene

No ASD Table

Relevant External Links for GC08P128000 Gene

GeneLoc Exon Structure for
GC08P128000

No data available for mRNA/cDNA for GC08P128000 Gene

Expression for GC08P128000 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P128000 Gene

Orthologs for GC08P128000 Gene

No data available for Orthologs and Evolution for GC08P128000 Gene

Paralogs for GC08P128000 Gene

No data available for Paralogs for GC08P128000 Gene

Variants for GC08P128000 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P128000 Gene

Disorders for GC08P128000 Gene

No disorders were found for GC08P128000 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P128000 Gene

Publications for GC08P128000 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba P.S. … Laird-Offringa I.A. (J. Biol. Chem. 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  3. Crystal structure at 1.92-A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C. … Nagai K. (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L. … Rosbash M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 1

Products for GC08P128000 Gene

Sources for GC08P128000 Gene

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