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Aliases for GC08P123547 Gene

Subcategory (RNA class) for GC08P123547 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC08P123547 Gene

No Aliases found

ORGUL Members for GC08P123547 Gene

No data available for External Ids for GC08P123547 Gene

Summaries for GC08P123547 Gene

GeneCards Summary for GC08P123547 Gene

GC08P123547 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P123547 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P123547

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P123547 Gene

Genomics for GC08P123547 Gene

Regulatory Elements for GC08P123547 Gene

Enhancers for GC08P123547 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G123546 1.4 Ensembl ENCODE dbSUPER 0.7 +0.6 617 3.0 PKNOX1 RFX5 SCRT2 RCOR1 FOS IKZF2 CREM SMARCC1 CEBPB JUNB LOC105375738 ANXA13 KLHL38 WDYHV1 ATAD2 GC08P123547 ENSG00000254113
GH08G123550 1.1 ENCODE dbSUPER 0.7 +4.0 3997 1.4 PKNOX1 TFAP4 FOXA2 SAP130 MAX RAD21 YY1 RARA FOS HES1 LOC105375738 KLHL38 GC08P123547 ENSG00000254113
GH08G123563 1 ENCODE dbSUPER 0.4 +17.1 17066 1.1 NFIB SIN3A RAD21 E2F1 CTBP1 GATA3 ARID3A FOS RCOR1 HES1 LOC105375738 FBXO32 KLHL38 WDYHV1 ATAD2 FAM83A-AS1 ENSG00000254113 GC08P123547
GH08G123552 0.8 ENCODE dbSUPER 0.4 +5.2 5195 0.2 CTCF RNF2 ZKSCAN8 ZNF175 RAD21 GABPA LOC105375738 ATAD2 WDYHV1 FAM83A-AS1 GC08P123547 ENSG00000254113
GH08G123554 0.8 Ensembl dbSUPER 0.4 +6.1 6060 0.2 KLF1 ZNF175 BACH1 CEBPB GABPA LOC105375738 ATAD2 WDYHV1 FAM83A-AS1 GC08P123547 ENSG00000254113
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P123547 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P123547 Gene

Chromosome:
8
Start:
123,547,041 bp from pter
End:
123,547,255 bp from pter
Size:
215 bases
Orientation:
Plus strand

Genomic View for GC08P123547 Gene

Genes around GC08P123547 on UCSC Golden Path with GeneCards custom track

GC08P123547 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P123547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P123547 Gene

ORGUL Member Location for GC08P123547 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P123547 Gene

Proteins for GC08P123547 Gene

Post-translational modifications for GC08P123547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P123547 Gene

Domains & Families for GC08P123547 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P123547 Gene

Function for GC08P123547 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P123547 Gene

Localization for GC08P123547 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P123547 Gene

Pathways & Interactions for GC08P123547 Gene

SuperPathways for GC08P123547 Gene

No Data Available

Interacting Proteins for GC08P123547 Gene

Gene Ontology (GO) - Biological Process for GC08P123547 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P123547 Gene

Drugs & Compounds for GC08P123547 Gene

No Compound Related Data Available

Transcripts for GC08P123547 Gene

fRNAdb Secondary structures for GC08P123547 Gene

  • FR147983
  • FR142254

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P123547 Gene

No ASD Table

Relevant External Links for GC08P123547 Gene

GeneLoc Exon Structure for
GC08P123547

No data available for mRNA/cDNA for GC08P123547 Gene

Expression for GC08P123547 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P123547 Gene

Orthologs for GC08P123547 Gene

No data available for Orthologs and Evolution for GC08P123547 Gene

Paralogs for GC08P123547 Gene

No data available for Paralogs for GC08P123547 Gene

Variants for GC08P123547 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P123547 Gene

Disorders for GC08P123547 Gene

No disorders were found for GC08P123547 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P123547 Gene

Publications for GC08P123547 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC08P123547 Gene

Sources for GC08P123547 Gene

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