Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC08P102894 Gene

Subcategory (RNA class) for GC08P102894 Gene

lncRNA

Quality Score for this RNA gene is

2.2

Aliases for GC08P102894 Gene

No Aliases found

No data available for External Ids for GC08P102894 Gene

Summaries for GC08P102894 Gene

GeneCards Summary for GC08P102894 Gene

GC08P102894 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC08P102894 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

View fRNAdb secondary structures for GC08P102894

Additional gene information for GC08P102894 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P102894 Gene

Genomics for GC08P102894 Gene

Regulatory Elements for GC08P102894 Gene

Enhancers for GC08P102894 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H102897 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.9 3929 2 TBP RFX1 CEBPB BMI1 EP300 GATA3 STAT3 RUNX3 TCF7L2 AZIN1-AS1 GC08P102894 RPL5P24
GH08H102894 1.1 Ensembl ENCODE dbSUPER 0.7 +0.1 92 1 RFX1 IKZF1 BMI1 MLLT1 EBF1 RAD21 GABPA AZIN1-AS1 GC08P102894 RPL5P24
GH08H102908 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.4 15449 2 JUN MAX CEBPB CEBPG ETS1 JUND GATA3 POLR2A POU5F1 FOS AZIN1-AS1 NPM1P52 ENSG00000254236 ATP6V1C1 AZIN1 RPL5P24 GC08P102894
GH08H102905 1.4 FANTOM5 Ensembl ENCODE 0.4 +12.2 12171 2 PKNOX1 NFIB YY1 ETS1 ELK1 ZNF143 RCOR1 FOS THAP11 ELK4 AZIN1-AS1 GC08P102894 RPL5P24
GH08H102902 1.3 Ensembl ENCODE dbSUPER 0.4 +9.0 8956 1 FOXA2 MAX RAD21 YY1 GATA3 SCRT2 HNF4G NR2F6 RUNX3 IKZF2 AZIN1-AS1 NPM1P52 ENSG00000254236 ATP6V1C1 GC08P102894 RPL5P24
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P102894 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P102894 Gene

Chromosome:
8
Start:
102,894,669 bp from pter
End:
102,895,288 bp from pter
Size:
620 bases
Orientation:
Plus strand

Genomic View for GC08P102894 Gene

Genes around GC08P102894 on UCSC Golden Path with GeneCards custom track

GC08P102894 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P102894 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P102894 Gene

ORGUL Member Location for GC08P102894 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P102894 Gene

Proteins for GC08P102894 Gene

Post-translational modifications for GC08P102894 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P102894 Gene

Domains & Families for GC08P102894 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P102894 Gene

Function for GC08P102894 Gene

Phenotypes From GWAS Catalog for GC08P102894 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P102894 Gene

Localization for GC08P102894 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P102894 Gene

Pathways & Interactions for GC08P102894 Gene

SuperPathways for GC08P102894 Gene

No Data Available

Interacting Proteins for GC08P102894 Gene

Gene Ontology (GO) - Biological Process for GC08P102894 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P102894 Gene

Drugs & Compounds for GC08P102894 Gene

No Compound Related Data Available

Transcripts for GC08P102894 Gene

fRNAdb Secondary structures for GC08P102894 Gene

  • FR213937
  • FR026950

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P102894 Gene

No ASD Table

Relevant External Links for GC08P102894 Gene

GeneLoc Exon Structure for
GC08P102894

No data available for mRNA/cDNA for GC08P102894 Gene

Expression for GC08P102894 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P102894 Gene

Orthologs for GC08P102894 Gene

No data available for Orthologs and Evolution for GC08P102894 Gene

Paralogs for GC08P102894 Gene

No data available for Paralogs for GC08P102894 Gene

Variants for GC08P102894 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P102894 Gene

Disorders for GC08P102894 Gene

No disorders were found for GC08P102894 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P102894 Gene

Publications for GC08P102894 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC08P102894 Gene

Sources for GC08P102894 Gene

Content
Loading form....