Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC08P092008 Gene

Subcategory (RNA class) for GC08P092008 Gene

undefined

Quality Score for this RNA gene is

0.4

Aliases for GC08P092008 Gene

No Aliases found

ORGUL Members for GC08P092008 Gene

No data available for External Ids for GC08P092008 Gene

Summaries for GC08P092008 Gene

GeneCards Summary for GC08P092008 Gene

GC08P092008 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P092008 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P092008

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P092008 Gene

Genomics for GC08P092008 Gene

Regulatory Elements for GC08P092008 Gene

Enhancers for GC08P092008 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G092007 1.8 Ensembl ENCODE 0.7 +0.6 566 3.3 JUND SIN3A FOXP2 FOS RAD21 ENSG00000253576 GC08P092008 RUNX1T1
GH08G092018 1.4 VISTA Ensembl ENCODE 0.4 +11.1 11088 3.0 BHLHE40 SIN3A CEBPB CEBPG REST RAD21 NR2F2 ZFHX2 JUND ATF3 GC08P092008 RUNX1T1
GH08G092093 2.2 ENCODE dbSUPER 0.2 +87.2 87200 3.5 ARNT E2F7 FEZF1 TCF12 GATA2 NCOA1 MAFF SMARCA4 NBN KDM1A RUNX1T1 GC08P092008
GH08G092077 2 Ensembl ENCODE dbSUPER 0.2 +70.3 70347 3.2 JUND POLR2A FOS FOXP2 RUNX1T1 GC08P092008
GH08G092058 1.8 VISTA Ensembl ENCODE dbSUPER 0.2 +52.5 52476 5.9 CTCF PKNOX1 MXI1 MAX SIN3A RAD21 ZNF366 POLR2A ZNF600 PRDM10 RUNX1T1 GC08P092008
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P092008 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P092008 Gene

Chromosome:
8
Start:
92,008,541 bp from pter
End:
92,008,700 bp from pter
Size:
160 bases
Orientation:
Plus strand

Genomic View for GC08P092008 Gene

Genes around GC08P092008 on UCSC Golden Path with GeneCards custom track

GC08P092008 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P092008 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P092008 Gene

ORGUL Member Location for GC08P092008 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P092008 Gene

Proteins for GC08P092008 Gene

Post-translational modifications for GC08P092008 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P092008 Gene

Domains & Families for GC08P092008 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P092008 Gene

Function for GC08P092008 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P092008 Gene

Localization for GC08P092008 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P092008 Gene

Pathways & Interactions for GC08P092008 Gene

SuperPathways for GC08P092008 Gene

No Data Available

Interacting Proteins for GC08P092008 Gene

Gene Ontology (GO) - Biological Process for GC08P092008 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P092008 Gene

Drugs & Compounds for GC08P092008 Gene

No Compound Related Data Available

Transcripts for GC08P092008 Gene

fRNAdb Secondary structures for GC08P092008 Gene

  • FR390640
  • FR403696

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P092008 Gene

No ASD Table

Relevant External Links for GC08P092008 Gene

GeneLoc Exon Structure for
GC08P092008

No data available for mRNA/cDNA for GC08P092008 Gene

Expression for GC08P092008 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P092008 Gene

Orthologs for GC08P092008 Gene

No data available for Orthologs and Evolution for GC08P092008 Gene

Paralogs for GC08P092008 Gene

No data available for Paralogs for GC08P092008 Gene

Variants for GC08P092008 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P092008 Gene

Disorders for GC08P092008 Gene

No disorders were found for GC08P092008 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P092008 Gene

Publications for GC08P092008 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC08P092008 Gene

Sources for GC08P092008 Gene

Content
Loading form....