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Aliases for GC08P058884 Gene

Subcategory (RNA class) for GC08P058884 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC08P058884 Gene

No Aliases found

ORGUL Members for GC08P058884 Gene

No data available for External Ids for GC08P058884 Gene

Summaries for GC08P058884 Gene

GeneCards Summary for GC08P058884 Gene

GC08P058884 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08P058884 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P058884

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P058884 Gene

Genomics for GC08P058884 Gene

Regulatory Elements for GC08P058884 Gene

Enhancers for GC08P058884 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G058881 1.1 Ensembl ENCODE dbSUPER 0.7 -2.3 -2254 1.2 BHLHE40 CEBPB MAX ATF2 OSR2 FOS MAFK PRDM1 MYC IKZF2 RNU4-50P GC08P058884 GC08M058815
GH08G058855 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 -26.7 -26678 4.6 CBX3 PKNOX1 SIN3A RAD21 CBX5 GATA2 RCOR1 FOS CEBPB REST TOX GC08P058884 RNU4-50P GC08M058815
GH08G058879 0.7 ENCODE dbSUPER 0.7 -4.8 -4846 0.9 CTCF JUND RAD21 GC08P058884 RNU4-50P GC08M058815
GH08G058849 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -33.8 -33781 2.4 SMARCC1 JUN USF2 CEBPB EP300 ATF2 GTF3C2 JUND GATA2 NFYB RPS26P7 NSMAF TOX GC08P058884 GC08M058815 RNU4-50P
GH08G058828 2.2 Ensembl ENCODE dbSUPER 0.2 -52.5 -52491 5.8 PKNOX1 RNF2 JUN BHLHE40 FOSL1 JUND FOXK2 GATA2 PBX2 IKZF1 TOX RNU4-50P GC08M058815 GC08P058884
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P058884 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P058884 Gene

Chromosome:
8
Start:
58,884,390 bp from pter
End:
58,884,539 bp from pter
Size:
150 bases
Orientation:
Plus strand

Genomic View for GC08P058884 Gene

Genes around GC08P058884 on UCSC Golden Path with GeneCards custom track

GC08P058884 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P058884 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P058884 Gene

ORGUL Member Location for GC08P058884 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P058884 Gene

Proteins for GC08P058884 Gene

Post-translational modifications for GC08P058884 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P058884 Gene

Domains & Families for GC08P058884 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P058884 Gene

Function for GC08P058884 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P058884 Gene

Localization for GC08P058884 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P058884 Gene

Pathways & Interactions for GC08P058884 Gene

SuperPathways for GC08P058884 Gene

No Data Available

Interacting Proteins for GC08P058884 Gene

Gene Ontology (GO) - Biological Process for GC08P058884 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P058884 Gene

Drugs & Compounds for GC08P058884 Gene

No Compound Related Data Available

Transcripts for GC08P058884 Gene

fRNAdb Secondary structures for GC08P058884 Gene

  • FR364570
  • FR104019

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P058884 Gene

No ASD Table

Relevant External Links for GC08P058884 Gene

GeneLoc Exon Structure for
GC08P058884

No data available for mRNA/cDNA for GC08P058884 Gene

Expression for GC08P058884 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P058884 Gene

Orthologs for GC08P058884 Gene

No data available for Orthologs and Evolution for GC08P058884 Gene

Paralogs for GC08P058884 Gene

No data available for Paralogs for GC08P058884 Gene

Variants for GC08P058884 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P058884 Gene

Disorders for GC08P058884 Gene

No disorders were found for GC08P058884 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P058884 Gene

Publications for GC08P058884 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC08P058884 Gene

Sources for GC08P058884 Gene

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