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Aliases for GC08P054331 Gene

Subcategory (RNA class) for GC08P054331 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08P054331 Gene

No Aliases found

ORGUL Members for GC08P054331 Gene

No data available for External Ids for GC08P054331 Gene

Summaries for GC08P054331 Gene

GeneCards Summary for GC08P054331 Gene

GC08P054331 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P054331 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC08P054331

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P054331 Gene

Genomics for GC08P054331 Gene

Regulatory Elements for GC08P054331 Gene

Enhancers for GC08P054331 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G054326 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.1 -3066 2.8 CTCF L3MBTL2 JUN ETV1 ATF2 NR2F2 GABPA ZNF589 GATA2 FOS SOX17 GC08P054331 GC08M054298
GH08G054309 0.4 ENCODE 0.3 -21.3 -21250 0.2 HNF4A RAD21 GC08M054298 GC08P054331
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P054331 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P054331 Gene

Chromosome:
8
Start:
54,330,685 bp from pter
End:
54,330,895 bp from pter
Size:
211 bases
Orientation:
Plus strand

Genomic View for GC08P054331 Gene

Genes around GC08P054331 on UCSC Golden Path with GeneCards custom track

GC08P054331 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P054331 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P054331 Gene

ORGUL Member Location for GC08P054331 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P054331 Gene

Proteins for GC08P054331 Gene

Post-translational modifications for GC08P054331 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P054331 Gene

Domains & Families for GC08P054331 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P054331 Gene

Function for GC08P054331 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P054331 Gene

Localization for GC08P054331 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P054331 Gene

Pathways & Interactions for GC08P054331 Gene

SuperPathways for GC08P054331 Gene

No Data Available

Interacting Proteins for GC08P054331 Gene

Gene Ontology (GO) - Biological Process for GC08P054331 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P054331 Gene

Drugs & Compounds for GC08P054331 Gene

No Compound Related Data Available

Transcripts for GC08P054331 Gene

fRNAdb Secondary structures for GC08P054331 Gene

  • FR276061
  • FR334112

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P054331 Gene

No ASD Table

Relevant External Links for GC08P054331 Gene

GeneLoc Exon Structure for
GC08P054331

No data available for mRNA/cDNA for GC08P054331 Gene

Expression for GC08P054331 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P054331 Gene

Orthologs for GC08P054331 Gene

No data available for Orthologs and Evolution for GC08P054331 Gene

Paralogs for GC08P054331 Gene

No data available for Paralogs for GC08P054331 Gene

Variants for GC08P054331 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P054331 Gene

Disorders for GC08P054331 Gene

No disorders were found for GC08P054331 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P054331 Gene

Publications for GC08P054331 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  2. Comparative structure analysis of vertebrate U17 small nucleolar RNA (snoRNA). (PMID: 11821910) Cervelli M. … Mariottini P. (J. Mol. Evol. 2002) 1
  3. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C. … Bachellerie J.P. (J. Mol. Biol. 2000) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin A.G. … Fournier M.J. (Cell 1996) 1
  5. 5'ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. (PMID: 8903340) Enright C.A. … Sollner-Webb B. (RNA 1996) 1

Products for GC08P054331 Gene

Sources for GC08P054331 Gene

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