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GC08P053915 Gene(RNA Gene)

 

GCID:
GC08P053915
GIFtS:
3
Genes Participants
UDN Logo

Aliases for GC08P053915 Gene

Subcategory (RNA class) for GC08P053915 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08P053915 Gene

No Aliases found

ORGUL Members for GC08P053915 Gene

No data available for External Ids for GC08P053915 Gene

Summaries for GC08P053915 Gene

GeneCards Summary for GC08P053915 Gene

GC08P053915 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08P053915 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC08P053915 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P053915 Gene

Genomics for GC08P053915 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for GC08P053915 Gene

Promoters and enhancers for GC08P053915 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08I053904 Enhancer 0.9 Ensembl ENCODE 0.4 -8.9 -8850 3 ARNT FEZF1 GATA3 POLR2A RCOR1 CHD2 SRF ZNF687 JUNB ZEB2 ATP6V1H GC08P053915 RPS27AP13 RGS20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC08P053915 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC08P053915 Gene

Genomic Locations for GC08P053915 Gene
chr8:53,914,718-53,914,824
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC08P053915 Gene

Genes around GC08P053915 on UCSC Golden Path with GeneCards custom track

GC08P053915 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P053915 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P053915 Gene

Proteins for GC08P053915 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GC08P053915 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P053915 Gene

Domains & Families for GC08P053915 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P053915 Gene

Function for GC08P053915 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P053915 Gene

Localization for GC08P053915 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P053915 Gene

Pathways & Interactions for GC08P053915 Gene

SuperPathways for GC08P053915 Gene

PathCards logo More details on SuperPathways for GC08P053915
No Data Available

Interacting Proteins for GC08P053915 Gene

Gene Ontology (GO) - Biological Process for GC08P053915 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P053915 Gene

Drugs & Compounds for GC08P053915 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GC08P053915 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P053915 Gene

No ASD Table

Relevant External Links for GC08P053915 Gene

GeneLoc Exon Structure for
GC08P053915

No data available for mRNA/cDNA for GC08P053915 Gene

Expression for GC08P053915 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P053915 Gene

Orthologs for GC08P053915 Gene

No data available for Orthologs and Evolution for GC08P053915 Gene

Paralogs for GC08P053915 Gene

No data available for Paralogs for GC08P053915 Gene

Variants for GC08P053915 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC08P053915 Gene

Disorders for GC08P053915 Gene

No disorders were found for GC08P053915 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P053915 Gene

Publications for GC08P053915 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC08P053915 Gene

Sources for GC08P053915 Gene

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