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Aliases for GC08P043378 Gene

Subcategory (RNA class) for GC08P043378 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08P043378 Gene

No Aliases found

ORGUL Members for GC08P043378 Gene

No data available for External Ids for GC08P043378 Gene

Summaries for GC08P043378 Gene

GeneCards Summary for GC08P043378 Gene

GC08P043378 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P043378 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P043378 Gene

Genomics for GC08P043378 Gene

Regulatory Elements for GC08P043378 Gene

Enhancers for GC08P043378 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G043373 0.3 FANTOM5 0.7 -4.9 -4869 0.1 ENSG00000254342 ENSG00000201329 GC08P043378
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P043378 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P043378 Gene

Chromosome:
8
Start:
43,378,297 bp from pter
End:
43,378,509 bp from pter
Size:
213 bases
Orientation:
Plus strand

Genomic View for GC08P043378 Gene

Genes around GC08P043378 on UCSC Golden Path with GeneCards custom track

GC08P043378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P043378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P043378 Gene

Proteins for GC08P043378 Gene

Post-translational modifications for GC08P043378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P043378 Gene

Domains & Families for GC08P043378 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P043378 Gene

Function for GC08P043378 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P043378 Gene

Localization for GC08P043378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P043378 Gene

Pathways & Interactions for GC08P043378 Gene

SuperPathways for GC08P043378 Gene

No Data Available

Interacting Proteins for GC08P043378 Gene

Gene Ontology (GO) - Biological Process for GC08P043378 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P043378 Gene

Drugs & Compounds for GC08P043378 Gene

No Compound Related Data Available

Transcripts for GC08P043378 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P043378 Gene

No ASD Table

Relevant External Links for GC08P043378 Gene

GeneLoc Exon Structure for
GC08P043378

No data available for mRNA/cDNA for GC08P043378 Gene

Expression for GC08P043378 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P043378 Gene

Orthologs for GC08P043378 Gene

No data available for Orthologs and Evolution for GC08P043378 Gene

Paralogs for GC08P043378 Gene

No data available for Paralogs for GC08P043378 Gene

Variants for GC08P043378 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P043378 Gene

Disorders for GC08P043378 Gene

No disorders were found for GC08P043378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P043378 Gene

Publications for GC08P043378 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W. … Terns M.P. (Mol. Cell. Biol. 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1

Products for GC08P043378 Gene

Sources for GC08P043378 Gene

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