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Aliases for GC08P041427 Gene

Subcategory (RNA class) for GC08P041427 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08P041427 Gene

No Aliases found

ORGUL Members for GC08P041427 Gene

No data available for External Ids for GC08P041427 Gene

Summaries for GC08P041427 Gene

GeneCards Summary for GC08P041427 Gene

GC08P041427 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P041427 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P041427 Gene

Genomics for GC08P041427 Gene

Regulatory Elements for GC08P041427 Gene

Enhancers for GC08P041427 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G041414 0.7 Ensembl ENCODE 0.4 -11.5 -11506 0.9 POLR2A MAX RBBP5 GOLGA7 GC08P041427 GC08P041390
GH08G041417 0.4 ENCODE 0.4 -8.6 -8598 0.2 JUND ZNF157 AP3M2 GINS4 SFRP1 GOLGA7 GC08P041427 GC08P041390
GH08G041392 0.5 ENCODE 0.3 -34.6 -34578 0.2 SMARCA4 POLR2A SIN3A GC08P041390 GC08P041427
GH08G041401 0.4 ENCODE 0.3 -25.5 -25458 0.2 HLF SFRP1 GC08P041390 GC08P041427
GH08G041397 0.2 ENCODE 0.3 -29.2 -29158 0.2 GINS4 GC08P041390 GC08P041427
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P041427 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P041427 Gene

Chromosome:
8
Start:
41,426,654 bp from pter
End:
41,426,727 bp from pter
Size:
74 bases
Orientation:
Plus strand

Genomic View for GC08P041427 Gene

Genes around GC08P041427 on UCSC Golden Path with GeneCards custom track

GC08P041427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P041427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P041427 Gene

Proteins for GC08P041427 Gene

Post-translational modifications for GC08P041427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P041427 Gene

Domains & Families for GC08P041427 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P041427 Gene

Function for GC08P041427 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P041427 Gene

Localization for GC08P041427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P041427 Gene

Pathways & Interactions for GC08P041427 Gene

SuperPathways for GC08P041427 Gene

No Data Available

Interacting Proteins for GC08P041427 Gene

Gene Ontology (GO) - Biological Process for GC08P041427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P041427 Gene

Drugs & Compounds for GC08P041427 Gene

No Compound Related Data Available

Transcripts for GC08P041427 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P041427 Gene

No ASD Table

Relevant External Links for GC08P041427 Gene

GeneLoc Exon Structure for
GC08P041427

No data available for mRNA/cDNA for GC08P041427 Gene

Expression for GC08P041427 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P041427 Gene

Orthologs for GC08P041427 Gene

No data available for Orthologs and Evolution for GC08P041427 Gene

Paralogs for GC08P041427 Gene

No data available for Paralogs for GC08P041427 Gene

Variants for GC08P041427 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P041427 Gene

Disorders for GC08P041427 Gene

No disorders were found for GC08P041427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P041427 Gene

Publications for GC08P041427 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 1

Products for GC08P041427 Gene

Sources for GC08P041427 Gene

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