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Aliases for GC08P033548 Gene

Subcategory (RNA class) for GC08P033548 Gene

snoRNA

Quality Score for this RNA gene is

2.2

Aliases for GC08P033548 Gene

No Aliases found

ORGUL Members for GC08P033548 Gene

No data available for External Ids for GC08P033548 Gene

Summaries for GC08P033548 Gene

GeneCards Summary for GC08P033548 Gene

GC08P033548 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P033548 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08P033548

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P033548 Gene

Genomics for GC08P033548 Gene

Regulatory Elements for GC08P033548 Gene

Enhancers for GC08P033548 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G033524 0.9 Ensembl ENCODE 0.4 -15.2 -15213 1.5 CTCF HLF CEBPB CEBPG SCRT2 CEBPA ZBTB33 SPI1 FUT10 LOC100630919 GC08P033548
GH08G033536 0.4 ENCODE 0.7 -3.8 -3825 0.2 SOX13 NR2F2 RNF122 SNORD13 TTI2 GC08P033548 LOC100630919
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P033548 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P033548 Gene

Chromosome:
8
Start:
33,540,022 bp from pter
End:
33,540,160 bp from pter
Size:
139 bases
Orientation:
Plus strand

Genomic View for GC08P033548 Gene

Genes around GC08P033548 on UCSC Golden Path with GeneCards custom track

GC08P033548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P033548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08P033548 Gene

ORGUL Member Location for GC08P033548 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P033548 Gene

Proteins for GC08P033548 Gene

Post-translational modifications for GC08P033548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P033548 Gene

Domains & Families for GC08P033548 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P033548 Gene

Function for GC08P033548 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P033548 Gene

Localization for GC08P033548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P033548 Gene

Pathways & Interactions for GC08P033548 Gene

SuperPathways for GC08P033548 Gene

No Data Available

Interacting Proteins for GC08P033548 Gene

Gene Ontology (GO) - Biological Process for GC08P033548 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P033548 Gene

Drugs & Compounds for GC08P033548 Gene

No Compound Related Data Available

Transcripts for GC08P033548 Gene

fRNAdb Secondary structures for GC08P033548 Gene

  • FR386597
  • FR175369

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P033548 Gene

No ASD Table

Relevant External Links for GC08P033548 Gene

GeneLoc Exon Structure for
GC08P033548

No data available for mRNA/cDNA for GC08P033548 Gene

Expression for GC08P033548 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P033548 Gene

Orthologs for GC08P033548 Gene

No data available for Orthologs and Evolution for GC08P033548 Gene

Paralogs for GC08P033548 Gene

No data available for Paralogs for GC08P033548 Gene

Variants for GC08P033548 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P033548 Gene

Disorders for GC08P033548 Gene

No disorders were found for GC08P033548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P033548 Gene

Publications for GC08P033548 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1
  3. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T. (Cell 2002) 1
  4. Pseudouridine in RNA: what, where, how, and why. (PMID: 10902565) Charette M. … Gray M.W. (IUBMB Life 2000) 1

Products for GC08P033548 Gene

Sources for GC08P033548 Gene

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