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Aliases for GC08P033513 Gene

Subcategory (RNA class) for GC08P033513 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08P033513 Gene

No Aliases found

ORGUL Members for GC08P033513 Gene

No data available for External Ids for GC08P033513 Gene

Summaries for GC08P033513 Gene

GeneCards Summary for GC08P033513 Gene

GC08P033513 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08P033513 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC08P033513 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P033513 Gene

Genomics for GC08P033513 Gene

Regulatory Elements for GC08P033513 Gene

Enhancers for GC08P033513 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H033509 0.8 ENCODE 0.7 -3.7 -3719 0 HDAC1 PKNOX1 ATF1 JUN FOSL1 ZNF316 CTBP1 FOXK2 TRIM24 NFE2 GC08P033513 MAK16
GH08H033483 1.1 ENCODE 0.3 -28.4 -28355 2 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 FUT10 MAK16 GC08P033513
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P033513 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P033513 Gene

Chromosome:
8
Start:
33,513,474 bp from pter
End:
33,513,578 bp from pter
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC08P033513 Gene

Genes around GC08P033513 on UCSC Golden Path with GeneCards custom track

GC08P033513 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P033513 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P033513 Gene

Proteins for GC08P033513 Gene

Post-translational modifications for GC08P033513 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P033513 Gene

Domains & Families for GC08P033513 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P033513 Gene

Function for GC08P033513 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P033513 Gene

Localization for GC08P033513 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08P033513 Gene

Pathways & Interactions for GC08P033513 Gene

SuperPathways for GC08P033513 Gene

No Data Available

Interacting Proteins for GC08P033513 Gene

Gene Ontology (GO) - Biological Process for GC08P033513 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P033513 Gene

Drugs & Compounds for GC08P033513 Gene

No Compound Related Data Available

Transcripts for GC08P033513 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P033513 Gene

No ASD Table

Relevant External Links for GC08P033513 Gene

GeneLoc Exon Structure for
GC08P033513

No data available for mRNA/cDNA for GC08P033513 Gene

Expression for GC08P033513 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P033513 Gene

Orthologs for GC08P033513 Gene

No data available for Orthologs and Evolution for GC08P033513 Gene

Paralogs for GC08P033513 Gene

No data available for Paralogs for GC08P033513 Gene

Variants for GC08P033513 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P033513 Gene

Disorders for GC08P033513 Gene

No disorders were found for GC08P033513 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P033513 Gene

Publications for GC08P033513 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. (PMID: 8973634) Cavaillé J … Bachellerie JP (European journal of biochemistry 1996) 1
  4. Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. (PMID: 8721999) Bachellerie JP … Renalier MH (Biochemistry and cell biology = Biochimie et biologie cellulaire 1995) 1
  5. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden BE (Progress in nucleic acid research and molecular biology 1990) 1

Products for GC08P033513 Gene

Sources for GC08P033513 Gene

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