Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC08P020230 Gene

Subcategory (RNA class) for GC08P020230 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08P020230 Gene

No Aliases found

ORGUL Members for GC08P020230 Gene

No data available for External Ids for GC08P020230 Gene

Summaries for GC08P020230 Gene

GeneCards Summary for GC08P020230 Gene

GC08P020230 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08P020230 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08P020230 Gene

Genomics for GC08P020230 Gene

Regulatory Elements for GC08P020230 Gene

Enhancers for GC08P020230 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G020220 1.4 Ensembl ENCODE dbSUPER 0.4 -7.3 -7340 4.0 HDAC1 PKNOX1 NFRKB RAD21 ZNF766 GATA2 ZSCAN5C SCRT2 ZNF143 FOS GC08P020230 ATP6V1B2
GH08G020196 1.8 FANTOM5 ENCODE dbSUPER 0.3 -31.8 -31819 2.8 HDGF MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 ZNF143 ATP6V1B2 GC08P020230
GH08G020199 1.7 FANTOM5 ENCODE dbSUPER 0.3 -27.5 -27465 5.5 PKNOX1 ATF1 ARNT ARID4B YY1 ZNF766 GATA2 FOS YY2 JUNB ATP6V1B2 RNU6-892P GC08P020230
GH08G020226 0.6 dbSUPER 0.7 -1.7 -1695 2.5 CTCF NR2F1 ETV1 GABPA NR2F2 GATA3 CEBPA IRF1 NFE2 NR2C2 GC08P020230 ATP6V1B2
GH08G020206 0.6 FANTOM5 dbSUPER 0.3 -22.9 -22941 0.3 ATP6V1B2 RNU6-892P SLC18A1 LZTS1 GC08P020230
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08P020230 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08P020230 Gene

Chromosome:
8
Start:
20,229,778 bp from pter
End:
20,229,877 bp from pter
Size:
100 bases
Orientation:
Plus strand

Genomic View for GC08P020230 Gene

Genes around GC08P020230 on UCSC Golden Path with GeneCards custom track

GC08P020230 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08P020230 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08P020230 Gene

Proteins for GC08P020230 Gene

Post-translational modifications for GC08P020230 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08P020230 Gene

Domains & Families for GC08P020230 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08P020230 Gene

Function for GC08P020230 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08P020230 Gene

Localization for GC08P020230 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08P020230 Gene

Pathways & Interactions for GC08P020230 Gene

SuperPathways for GC08P020230 Gene

No Data Available

Interacting Proteins for GC08P020230 Gene

Gene Ontology (GO) - Biological Process for GC08P020230 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08P020230 Gene

Drugs & Compounds for GC08P020230 Gene

No Compound Related Data Available

Transcripts for GC08P020230 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08P020230 Gene

No ASD Table

Relevant External Links for GC08P020230 Gene

GeneLoc Exon Structure for
GC08P020230

No data available for mRNA/cDNA for GC08P020230 Gene

Expression for GC08P020230 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08P020230 Gene

Orthologs for GC08P020230 Gene

No data available for Orthologs and Evolution for GC08P020230 Gene

Paralogs for GC08P020230 Gene

No data available for Paralogs for GC08P020230 Gene

Variants for GC08P020230 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08P020230 Gene

Disorders for GC08P020230 Gene

No disorders were found for GC08P020230 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08P020230 Gene

Publications for GC08P020230 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC08P020230 Gene

Sources for GC08P020230 Gene

Content
Loading form....