Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC08M135743 Gene

Subcategory (RNA class) for GC08M135743 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08M135743 Gene

No Aliases found

ORGUL Members for GC08M135743 Gene

No data available for External Ids for GC08M135743 Gene

Summaries for GC08M135743 Gene

GeneCards Summary for GC08M135743 Gene

GC08M135743 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08M135743 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M135743 Gene

Genomics for GC08M135743 Gene

Regulatory Elements for GC08M135743 Gene

Enhancers for GC08M135743 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G135790 0.5 ENCODE 0.2 -48.3 -48297 1.2 SMARCA4 TEAD4 CREB1 TRIM28 GC08M135743 RNU1-35P PIR42033
GH08G135923 0.9 ENCODE 0.1 -180.9 -180915 0.7 PKNOX1 TBL1XR1 WRNIP1 BMI1 CBX5 RELB ETV6 IKZF2 CREM CEBPB PIR42033 GC08M135743 RNU1-35P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M135743 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M135743 Gene

Chromosome:
8
Start:
135,742,342 bp from pter
End:
135,742,495 bp from pter
Size:
154 bases
Orientation:
Minus strand

Genomic View for GC08M135743 Gene

Genes around GC08M135743 on UCSC Golden Path with GeneCards custom track

GC08M135743 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M135743 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M135743 Gene

Proteins for GC08M135743 Gene

Post-translational modifications for GC08M135743 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M135743 Gene

Domains & Families for GC08M135743 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M135743 Gene

Function for GC08M135743 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M135743 Gene

Localization for GC08M135743 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M135743 Gene

Pathways & Interactions for GC08M135743 Gene

SuperPathways for GC08M135743 Gene

No Data Available

Interacting Proteins for GC08M135743 Gene

Gene Ontology (GO) - Biological Process for GC08M135743 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M135743 Gene

Drugs & Compounds for GC08M135743 Gene

No Compound Related Data Available

Transcripts for GC08M135743 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M135743 Gene

No ASD Table

Relevant External Links for GC08M135743 Gene

GeneLoc Exon Structure for
GC08M135743

No data available for mRNA/cDNA for GC08M135743 Gene

Expression for GC08M135743 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M135743 Gene

Orthologs for GC08M135743 Gene

No data available for Orthologs and Evolution for GC08M135743 Gene

Paralogs for GC08M135743 Gene

No data available for Paralogs for GC08M135743 Gene

Variants for GC08M135743 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M135743 Gene

Disorders for GC08M135743 Gene

No disorders were found for GC08M135743 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M135743 Gene

Publications for GC08M135743 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba P.S. … Laird-Offringa I.A. (J. Biol. Chem. 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  3. Crystal structure at 1.92-A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C. … Nagai K. (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L. … Rosbash M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 1

Products for GC08M135743 Gene

Sources for GC08M135743 Gene

Content
Loading form....