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Aliases for GC08M130070 Gene

Subcategory (RNA class) for GC08M130070 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08M130070 Gene

No Aliases found

ORGUL Members for GC08M130070 Gene

No data available for External Ids for GC08M130070 Gene

Summaries for GC08M130070 Gene

GeneCards Summary for GC08M130070 Gene

GC08M130070 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08M130070 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC08M130070 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M130070 Gene

Genomics for GC08M130070 Gene

Regulatory Elements for GC08M130070 Gene

Enhancers for GC08M130070 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H130066 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +1.3 1262 3 PKNOX1 TAL1 BMI1 ZKSCAN1 FOSL1 TCF12 ZNF316 GATA2 ZNF366 NFE2 RNU7-181P FAM49B ASAP1 GC08M130070 RNU6-1255P
GH08H130041 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +27.2 27207 1 HDGF PKNOX1 ATF1 ARNT SIN3A BRCA1 TCF12 ZNF766 GATA2 ELK1 ASAP1 FAM49B GC08M130070 RNU6-1255P
GH08H130061 1.3 Ensembl ENCODE dbSUPER 0.4 +6.0 6047 4 TFAP4 FOXA2 TAL1 JUN RFX5 TEAD3 GATA3 POLR2A FOS RUNX3 FAM49B RNU7-181P ASAP1 GC08M130070 RNU6-1255P
GH08H130045 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.5 23465 1 ATF1 MAX ZIC2 ZFHX2 POLR2A CREM ZBTB20 SRF L3MBTL2 MNT GC08M130070 RNU6-1255P FAM49B
GH08H130065 0.6 ENCODE dbSUPER 0.7 +3.8 3843 0 POLR2A RNU6-1255P GC08M130070 FAM49B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M130070 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M130070 Gene

Chromosome:
8
Start:
130,069,540 bp from pter
End:
130,069,652 bp from pter
Size:
113 bases
Orientation:
Minus strand

Genomic View for GC08M130070 Gene

Genes around GC08M130070 on UCSC Golden Path with GeneCards custom track

GC08M130070 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M130070 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M130070 Gene

Proteins for GC08M130070 Gene

Post-translational modifications for GC08M130070 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M130070 Gene

Domains & Families for GC08M130070 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M130070 Gene

Function for GC08M130070 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M130070 Gene

Localization for GC08M130070 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08M130070 Gene

Pathways & Interactions for GC08M130070 Gene

SuperPathways for GC08M130070 Gene

No Data Available

Interacting Proteins for GC08M130070 Gene

Gene Ontology (GO) - Biological Process for GC08M130070 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M130070 Gene

Drugs & Compounds for GC08M130070 Gene

No Compound Related Data Available

Transcripts for GC08M130070 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M130070 Gene

No ASD Table

Relevant External Links for GC08M130070 Gene

GeneLoc Exon Structure for
GC08M130070

No data available for mRNA/cDNA for GC08M130070 Gene

Expression for GC08M130070 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M130070 Gene

Orthologs for GC08M130070 Gene

No data available for Orthologs and Evolution for GC08M130070 Gene

Paralogs for GC08M130070 Gene

No data available for Paralogs for GC08M130070 Gene

Variants for GC08M130070 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M130070 Gene

Disorders for GC08M130070 Gene

No disorders were found for GC08M130070 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M130070 Gene

Publications for GC08M130070 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC08M130070 Gene

Sources for GC08M130070 Gene

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