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Aliases for GC08M115411 Gene

Subcategory (RNA class) for GC08M115411 Gene


Quality Score for this RNA gene is


Aliases for GC08M115411 Gene

No Aliases found

ORGUL Members for GC08M115411 Gene

No data available for External Ids for GC08M115411 Gene

Summaries for GC08M115411 Gene

GeneCards Summary for GC08M115411 Gene

GC08M115411 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC08M115411 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC08M115411

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M115411 Gene

Genomics for GC08M115411 Gene

Regulatory Elements for GC08M115411 Gene

Enhancers for GC08M115411 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G115417 2.7 VISTA Ensembl ENCODE dbSUPER 0.4 -6.7 -6738 3.1 PKNOX1 NR2F1 DPF2 RAD21 CHAMP1 RAD51 CBX1 JUND EGR1 PBX2 GC08M115411 GC08P115500
GH08G115447 2.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -38.5 -38450 5.4 PKNOX1 FOXA2 CBX3 NFIB FEZF1 CHAMP1 GATA2 FOS MIER1 ELF4 ENSG00000227170 TRPS1 GC08M115411 GC08P115500
GH08G115426 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.0 -16973 4.5 PKNOX1 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 CBX5 FOS JUNB TRPS1 GC08M115411 GC08P115500
GH08G115464 1.6 ENCODE dbSUPER 0.2 -52.6 -52587 1.5 JUND ENSG00000227170 GC08P115500 GC08M115411
GH08G115435 1 ENCODE dbSUPER 0.3 -23.9 -23927 1.0 CTCF ATF1 PKNOX1 ARNT JUN ZNF384 ZBTB40 RAD21 YY1 GATA3 GC08M115411 GC08P115500
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M115411 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M115411 Gene

115,411,996 bp from pter
115,412,178 bp from pter
183 bases
Minus strand

Genomic View for GC08M115411 Gene

Genes around GC08M115411 on UCSC Golden Path with GeneCards custom track

GC08M115411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M115411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08M115411 Gene

ORGUL Member Location for GC08M115411 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M115411 Gene

Proteins for GC08M115411 Gene

Post-translational modifications for GC08M115411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M115411 Gene

Domains & Families for GC08M115411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M115411 Gene

Function for GC08M115411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M115411 Gene

Localization for GC08M115411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M115411 Gene

Pathways & Interactions for GC08M115411 Gene

SuperPathways for GC08M115411 Gene

No Data Available

Interacting Proteins for GC08M115411 Gene

Gene Ontology (GO) - Biological Process for GC08M115411 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC08M115411 Gene

Drugs & Compounds for GC08M115411 Gene

No Compound Related Data Available

Transcripts for GC08M115411 Gene

fRNAdb Secondary structures for GC08M115411 Gene

  • FR051543
  • FR038521

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M115411 Gene

No ASD Table

Relevant External Links for GC08M115411 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC08M115411 Gene

Expression for GC08M115411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M115411 Gene

Orthologs for GC08M115411 Gene

No data available for Orthologs and Evolution for GC08M115411 Gene

Paralogs for GC08M115411 Gene

No data available for Paralogs for GC08M115411 Gene

Variants for GC08M115411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M115411 Gene

Disorders for GC08M115411 Gene

No disorders were found for GC08M115411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M115411 Gene

Publications for GC08M115411 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S. … Stadler P.F. (Nat. Biotechnol. 2005) 1

Products for GC08M115411 Gene

Sources for GC08M115411 Gene

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