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Aliases for GC08M092167 Gene

Subcategory (RNA class) for GC08M092167 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC08M092167 Gene

No Aliases found

ORGUL Members for GC08M092167 Gene

No data available for External Ids for GC08M092167 Gene

Summaries for GC08M092167 Gene

GeneCards Summary for GC08M092167 Gene

GC08M092167 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC08M092167 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

  • 5S ribosomal RNA: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

View fRNAdb secondary structures for GC08M092167

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M092167 Gene

Genomics for GC08M092167 Gene

Regulatory Elements for GC08M092167 Gene

Enhancers for GC08M092167 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G092148 0.6 ENCODE 0.4 +18.7 18651 1.3 PKNOX1 DPF2 REST RAD21 FOXA1 JUND CTBP1 GATA3 MTA1 CUX1 RUNX1T1 RPS26P10 GC08M092167
GH08G092149 0.6 ENCODE 0.4 +16.7 16690 1.9 ZFHX2 FOXA2 JUND GLIS1 BHLHE40 TEAD4 FOS RPS26P10 GC08M092167
GH08G092351 0.5 ENCODE 0.1 -184.5 -184508 1.4 JUND PKNOX1 CEBPG ENSG00000253118 GC08M092167
GH08G092344 0.4 ENCODE 0.1 -177.1 -177101 0.2 RFX1 BMI1 ENSG00000253118 GC08M092167
GH08G092345 0.2 ENCODE 0.1 -177.8 -177761 0.2 ENSG00000253118 GC08M092167
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M092167 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M092167 Gene

Chromosome:
8
Start:
92,167,442 bp from pter
End:
92,167,547 bp from pter
Size:
106 bases
Orientation:
Minus strand

Genomic View for GC08M092167 Gene

Genes around GC08M092167 on UCSC Golden Path with GeneCards custom track

GC08M092167 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M092167 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC08M092167 Gene

ORGUL Member Location for GC08M092167 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M092167 Gene

Proteins for GC08M092167 Gene

Post-translational modifications for GC08M092167 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M092167 Gene

Domains & Families for GC08M092167 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M092167 Gene

Function for GC08M092167 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M092167 Gene

Localization for GC08M092167 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M092167 Gene

Pathways & Interactions for GC08M092167 Gene

SuperPathways for GC08M092167 Gene

No Data Available

Interacting Proteins for GC08M092167 Gene

Gene Ontology (GO) - Biological Process for GC08M092167 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M092167 Gene

Drugs & Compounds for GC08M092167 Gene

No Compound Related Data Available

Transcripts for GC08M092167 Gene

fRNAdb Secondary structures for GC08M092167 Gene

  • FR129148

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M092167 Gene

No ASD Table

Relevant External Links for GC08M092167 Gene

GeneLoc Exon Structure for
GC08M092167

No data available for mRNA/cDNA for GC08M092167 Gene

Expression for GC08M092167 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M092167 Gene

Orthologs for GC08M092167 Gene

No data available for Orthologs and Evolution for GC08M092167 Gene

Paralogs for GC08M092167 Gene

No data available for Paralogs for GC08M092167 Gene

Variants for GC08M092167 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M092167 Gene

Disorders for GC08M092167 Gene

No disorders were found for GC08M092167 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M092167 Gene

Publications for GC08M092167 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC08M092167 Gene

Sources for GC08M092167 Gene

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