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Aliases for GC08M080586 Gene

Subcategory (RNA class) for GC08M080586 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08M080586 Gene

No Aliases found

ORGUL Members for GC08M080586 Gene

No data available for External Ids for GC08M080586 Gene

Summaries for GC08M080586 Gene

GeneCards Summary for GC08M080586 Gene

GC08M080586 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08M080586 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC08M080586 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M080586 Gene

Genomics for GC08M080586 Gene

Regulatory Elements for GC08M080586 Gene

Enhancers for GC08M080586 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H080576 1.5 FANTOM5 Ensembl ENCODE 0.4 +7.5 7504 3 SIN3A FEZF1 YY1 GLIS2 ZNF202 SP3 REST ZNF610 GLIS1 ETV4 TPD52 GC08M080586 OCIAD2P1 RNU2-71P
GH08H080579 0.6 ENCODE 0.4 +5.7 5743 0 CTCF ZNF654 GATA3 SMC3 ZNF384 PPARG RAD21 RNU2-71P GC08M080586 OCIAD2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M080586 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M080586 Gene

Chromosome:
8
Start:
80,585,584 bp from pter
End:
80,585,773 bp from pter
Size:
190 bases
Orientation:
Minus strand

Genomic View for GC08M080586 Gene

Genes around GC08M080586 on UCSC Golden Path with GeneCards custom track

GC08M080586 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M080586 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M080586 Gene

Proteins for GC08M080586 Gene

Post-translational modifications for GC08M080586 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M080586 Gene

Domains & Families for GC08M080586 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M080586 Gene

Function for GC08M080586 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M080586 Gene

Localization for GC08M080586 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC08M080586 Gene

Pathways & Interactions for GC08M080586 Gene

SuperPathways for GC08M080586 Gene

No Data Available

Interacting Proteins for GC08M080586 Gene

Gene Ontology (GO) - Biological Process for GC08M080586 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M080586 Gene

Drugs & Compounds for GC08M080586 Gene

No Compound Related Data Available

Transcripts for GC08M080586 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M080586 Gene

No ASD Table

Relevant External Links for GC08M080586 Gene

GeneLoc Exon Structure for
GC08M080586

No data available for mRNA/cDNA for GC08M080586 Gene

Expression for GC08M080586 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M080586 Gene

Orthologs for GC08M080586 Gene

No data available for Orthologs and Evolution for GC08M080586 Gene

Paralogs for GC08M080586 Gene

No data available for Paralogs for GC08M080586 Gene

Variants for GC08M080586 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M080586 Gene

Disorders for GC08M080586 Gene

No disorders were found for GC08M080586 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M080586 Gene

Publications for GC08M080586 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC08M080586 Gene

Sources for GC08M080586 Gene

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