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Aliases for GC08M080317 Gene

Subcategory (RNA class) for GC08M080317 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08M080317 Gene

No Aliases found

ORGUL Members for GC08M080317 Gene

No data available for External Ids for GC08M080317 Gene

Summaries for GC08M080317 Gene

GeneCards Summary for GC08M080317 Gene

GC08M080317 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08M080317 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M080317 Gene

Genomics for GC08M080317 Gene

Regulatory Elements for GC08M080317 Gene

Enhancers for GC08M080317 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G080322 0.9 ENCODE 0.4 -5.9 -5932 0.1 PKNOX1 ZNF133 ZNF2 RAD21 YY1 ZNF766 CBX5 FOS KLF7 RELB ENSG00000206649 GC08M080317 LOC100216346
GH08G080300 0.9 ENCODE 0.4 +16.0 16002 1.7 PKNOX1 NFIB ZSCAN4 INSM2 FEZF1 RFX5 ZNF366 FOS TSHZ1 ZEB2 TPD52 RPS5P5 GC08M080317 ENSG00000206649
GH08G080330 0.9 ENCODE 0.4 -13.6 -13642 0.1 PKNOX1 ZNF133 INSM2 KLF17 FEZF1 ZNF48 ZSCAN5C ZNF391 OVOL3 REST RNU6-1213P ZBTB10 ENSG00000251867 ENSG00000206649 GC08M080317 LOC100216346
GH08G080347 1 ENCODE 0.3 -31.1 -31145 0.5 PKNOX1 FEZF1 ZNF2 ELK1 CBX5 ZNF143 FOS DEK JUNB TSHZ1 ENSG00000206649 RNU6-1213P TPD52 LOC100216346 GC08M080317
GH08G080349 0.9 FANTOM5 ENCODE 0.3 -32.7 -32666 0.3 ZNF692 IKZF1 ZNF394 RELB IKZF2 ZBTB20 RELA ENSG00000206649 RNU6-1213P TPD52 LOC100216346 GC08M080317
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M080317 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M080317 Gene

Chromosome:
8
Start:
80,316,938 bp from pter
End:
80,317,069 bp from pter
Size:
132 bases
Orientation:
Minus strand

Genomic View for GC08M080317 Gene

Genes around GC08M080317 on UCSC Golden Path with GeneCards custom track

GC08M080317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M080317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M080317 Gene

Proteins for GC08M080317 Gene

Post-translational modifications for GC08M080317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M080317 Gene

Domains & Families for GC08M080317 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M080317 Gene

Function for GC08M080317 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M080317 Gene

Localization for GC08M080317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M080317 Gene

Pathways & Interactions for GC08M080317 Gene

SuperPathways for GC08M080317 Gene

No Data Available

Interacting Proteins for GC08M080317 Gene

Gene Ontology (GO) - Biological Process for GC08M080317 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M080317 Gene

Drugs & Compounds for GC08M080317 Gene

No Compound Related Data Available

Transcripts for GC08M080317 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M080317 Gene

No ASD Table

Relevant External Links for GC08M080317 Gene

GeneLoc Exon Structure for
GC08M080317

No data available for mRNA/cDNA for GC08M080317 Gene

Expression for GC08M080317 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M080317 Gene

Orthologs for GC08M080317 Gene

No data available for Orthologs and Evolution for GC08M080317 Gene

Paralogs for GC08M080317 Gene

No data available for Paralogs for GC08M080317 Gene

Variants for GC08M080317 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M080317 Gene

Disorders for GC08M080317 Gene

No disorders were found for GC08M080317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M080317 Gene

Publications for GC08M080317 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1

Products for GC08M080317 Gene

Sources for GC08M080317 Gene

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