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Aliases for GC08M058815 Gene

Subcategory (RNA class) for GC08M058815 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC08M058815 Gene

No Aliases found

ORGUL Members for GC08M058815 Gene

No data available for External Ids for GC08M058815 Gene

Summaries for GC08M058815 Gene

GeneCards Summary for GC08M058815 Gene

GC08M058815 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC08M058815 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M058815 Gene

Genomics for GC08M058815 Gene

Regulatory Elements for GC08M058815 Gene

Enhancers for GC08M058815 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G058807 2.3 Ensembl ENCODE dbSUPER 0.4 +6.3 6326 1.4 CTCF WRNIP1 RAD21 CHAMP1 TEAD3 GATA2 EGR1 SCRT2 ZNF143 SMC3 GC08M058815 RNU4-50P LOC105375858
GH08G058828 2.2 Ensembl ENCODE dbSUPER 0.4 -17.3 -17348 5.8 PKNOX1 RNF2 JUN BHLHE40 FOSL1 JUND FOXK2 GATA2 PBX2 IKZF1 TOX GC08M058815 RNU4-50P GC08P058884
GH08G058799 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.1 13074 3.6 PKNOX1 ATF1 GATA2 CBX5 JUNB TBX21 PBX2 STAT3 NBN HMBOX1 TOX LOC100505501 GC08M058815 RNU4-50P LOC105375858
GH08G058855 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 -43.2 -43161 4.6 CBX3 PKNOX1 SIN3A RAD21 CBX5 GATA2 RCOR1 FOS CEBPB REST TOX GC08P058884 GC08M058815 RNU4-50P
GH08G058849 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -36.1 -36058 2.4 SMARCC1 JUN USF2 CEBPB EP300 ATF2 GTF3C2 JUND GATA2 NFYB RPS26P7 NSMAF TOX GC08P058884 RNU4-50P GC08M058815
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M058815 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M058815 Gene

Chromosome:
8
Start:
58,814,411 bp from pter
End:
58,814,552 bp from pter
Size:
142 bases
Orientation:
Minus strand

Genomic View for GC08M058815 Gene

Genes around GC08M058815 on UCSC Golden Path with GeneCards custom track

GC08M058815 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M058815 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M058815 Gene

Proteins for GC08M058815 Gene

Post-translational modifications for GC08M058815 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M058815 Gene

Domains & Families for GC08M058815 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M058815 Gene

Function for GC08M058815 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M058815 Gene

Localization for GC08M058815 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M058815 Gene

Pathways & Interactions for GC08M058815 Gene

SuperPathways for GC08M058815 Gene

No Data Available

Interacting Proteins for GC08M058815 Gene

Gene Ontology (GO) - Biological Process for GC08M058815 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M058815 Gene

Drugs & Compounds for GC08M058815 Gene

No Compound Related Data Available

Transcripts for GC08M058815 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M058815 Gene

No ASD Table

Relevant External Links for GC08M058815 Gene

GeneLoc Exon Structure for
GC08M058815

No data available for mRNA/cDNA for GC08M058815 Gene

Expression for GC08M058815 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M058815 Gene

Orthologs for GC08M058815 Gene

No data available for Orthologs and Evolution for GC08M058815 Gene

Paralogs for GC08M058815 Gene

No data available for Paralogs for GC08M058815 Gene

Variants for GC08M058815 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M058815 Gene

Disorders for GC08M058815 Gene

No disorders were found for GC08M058815 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M058815 Gene

Publications for GC08M058815 Gene

  1. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I. … Ficner R. (Mol. Cell 2000) 1
  2. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan P.L. … Guthrie C. (Science 1998) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC08M058815 Gene

Sources for GC08M058815 Gene

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