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Aliases for GC08M055903 Gene

Subcategory (RNA class) for GC08M055903 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08M055903 Gene

No Aliases found

ORGUL Members for GC08M055903 Gene

No data available for External Ids for GC08M055903 Gene

Summaries for GC08M055903 Gene

GeneCards Summary for GC08M055903 Gene

GC08M055903 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08M055903 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M055903 Gene

Genomics for GC08M055903 Gene

Regulatory Elements for GC08M055903 Gene

Enhancers for GC08M055903 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G055901 1.3 Ensembl ENCODE dbSUPER 0.7 +1.2 1180 2.3 HDAC1 TBP JUN MAX ZNF316 GATA2 EED NFE2 FOS MAFK LYN TGS1 ENSG00000199405 GC08M055903 ENSG00000254325
GH08G055917 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.2 -16176 3.2 WRNIP1 YBX1 TCF12 ZNF121 ZNF766 GATA2 REST TBX21 ZNF592 SMARCA4 LYN GC08P055928 GC08M055903 ENSG00000199405
GH08G055905 0.9 Ensembl ENCODE dbSUPER 0.7 -3.9 -3863 2.4 STAT1 ATF2 PENK LYN ENSG00000199405 GC08M055903 GC08P055928
GH08G055921 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.5 -23459 10.0 HDGF PKNOX1 WRNIP1 SIN3A ELK1 ZNF143 FOS JUNB REST TBX21 LYN RPS20 GC08P055928 GC08M055903 ENSG00000199405
GH08G055913 1.1 ENCODE dbSUPER 0.4 -11.4 -11395 1.1 HDAC1 HDGF PKNOX1 TBL1XR1 ARNT NFRKB NFXL1 ZBTB40 TCF12 GATA2 ENSG00000199405 GC08M055903 GC08P055928
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M055903 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M055903 Gene

Chromosome:
8
Start:
55,902,722 bp from pter
End:
55,902,855 bp from pter
Size:
134 bases
Orientation:
Minus strand

Genomic View for GC08M055903 Gene

Genes around GC08M055903 on UCSC Golden Path with GeneCards custom track

GC08M055903 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M055903 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M055903 Gene

Proteins for GC08M055903 Gene

Post-translational modifications for GC08M055903 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M055903 Gene

Domains & Families for GC08M055903 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M055903 Gene

Function for GC08M055903 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M055903 Gene

Localization for GC08M055903 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M055903 Gene

Pathways & Interactions for GC08M055903 Gene

SuperPathways for GC08M055903 Gene

No Data Available

Interacting Proteins for GC08M055903 Gene

Gene Ontology (GO) - Biological Process for GC08M055903 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M055903 Gene

Drugs & Compounds for GC08M055903 Gene

No Compound Related Data Available

Transcripts for GC08M055903 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M055903 Gene

No ASD Table

Relevant External Links for GC08M055903 Gene

GeneLoc Exon Structure for
GC08M055903

No data available for mRNA/cDNA for GC08M055903 Gene

Expression for GC08M055903 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M055903 Gene

Orthologs for GC08M055903 Gene

No data available for Orthologs and Evolution for GC08M055903 Gene

Paralogs for GC08M055903 Gene

No data available for Paralogs for GC08M055903 Gene

Variants for GC08M055903 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M055903 Gene

Disorders for GC08M055903 Gene

No disorders were found for GC08M055903 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M055903 Gene

Publications for GC08M055903 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1

Products for GC08M055903 Gene

Sources for GC08M055903 Gene

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