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Aliases for GC08M039018 Gene

Subcategory (RNA class) for GC08M039018 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC08M039018 Gene

No Aliases found

ORGUL Members for GC08M039018 Gene

No data available for External Ids for GC08M039018 Gene

Summaries for GC08M039018 Gene

GeneCards Summary for GC08M039018 Gene

GC08M039018 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC08M039018 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M039018 Gene

Genomics for GC08M039018 Gene

Regulatory Elements for GC08M039018 Gene

Enhancers for GC08M039018 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G038995 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.9 17887 10.8 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ADAM32 HTRA4 ENSG00000253645 PLEKHA2 ENSG00000272128 ADAM9 ENSG00000207199 GC08M039018
GH08G039035 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.1 -19059 5.3 FOXA2 ATF1 ARNT SIN3A YY1 GATA2 FOS DEK ZNF202 JUNB ADAM32 ADAM9 TM2D2 ENSG00000272128 HTRA4 TACC1 PLEKHA2 ENSG00000207199 GC08M039018
GH08G039016 1 ENCODE dbSUPER 0.7 +1.5 1497 1.8 HDAC1 ESRRA LEF1 NFRKB CEBPG TCF12 ZNF316 GATA2 NCOR1 NFE2 ADAM32 ENSG00000272128 ENSG00000207199 GC08M039018 ADAM9
GH08G039032 1.4 Ensembl ENCODE dbSUPER 0.4 -14.4 -14416 2.2 FOXA2 ARID4B KLF17 SIN3A ZNF48 GTF3C2 EGR1 KLF7 EGR2 SP3 ADAM32 ADAM9 GC08M039018 ENSG00000207199
GH08G039013 0.6 dbSUPER 0.7 +4.0 4031 1.9 DPF2 NR2F2 ZNF664 FOSL1 ZNF316 JUND MAFF EMSY MAFK ADAM32 GC08M039018 ENSG00000207199 ADAM9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M039018 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M039018 Gene

Chromosome:
8
Start:
39,018,614 bp from pter
End:
39,018,683 bp from pter
Size:
70 bases
Orientation:
Minus strand

Genomic View for GC08M039018 Gene

Genes around GC08M039018 on UCSC Golden Path with GeneCards custom track

GC08M039018 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M039018 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M039018 Gene

Proteins for GC08M039018 Gene

Post-translational modifications for GC08M039018 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M039018 Gene

Domains & Families for GC08M039018 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M039018 Gene

Function for GC08M039018 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M039018 Gene

Localization for GC08M039018 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M039018 Gene

Pathways & Interactions for GC08M039018 Gene

SuperPathways for GC08M039018 Gene

No Data Available

Interacting Proteins for GC08M039018 Gene

Gene Ontology (GO) - Biological Process for GC08M039018 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M039018 Gene

Drugs & Compounds for GC08M039018 Gene

No Compound Related Data Available

Transcripts for GC08M039018 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M039018 Gene

No ASD Table

Relevant External Links for GC08M039018 Gene

GeneLoc Exon Structure for
GC08M039018

No data available for mRNA/cDNA for GC08M039018 Gene

Expression for GC08M039018 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M039018 Gene

Orthologs for GC08M039018 Gene

No data available for Orthologs and Evolution for GC08M039018 Gene

Paralogs for GC08M039018 Gene

No data available for Paralogs for GC08M039018 Gene

Variants for GC08M039018 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M039018 Gene

Disorders for GC08M039018 Gene

No disorders were found for GC08M039018 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M039018 Gene

Publications for GC08M039018 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 1
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M. … Bachellerie J.P. (J. Mol. Biol. 1996) 1

Products for GC08M039018 Gene

Sources for GC08M039018 Gene

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