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Aliases for GC08M029049 Gene

Subcategory (RNA class) for GC08M029049 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC08M029049 Gene

No Aliases found

ORGUL Members for GC08M029049 Gene

No data available for External Ids for GC08M029049 Gene

Summaries for GC08M029049 Gene

GeneCards Summary for GC08M029049 Gene

GC08M029049 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC08M029049 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC08M029049 Gene

Genomics for GC08M029049 Gene

Regulatory Elements for GC08M029049 Gene

Enhancers for GC08M029049 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G029045 0.7 dbSUPER 0.7 +1.5 1504 2.4 PKNOX1 ZSCAN4 DPF2 TBX21 YY1 ZNF316 ZNF585B GLIS1 PBX2 IKZF1 ENSG00000254129 KIF13B GC08M029049 RNA5SP260 LOC105379346
GH08G029048 0.6 ENCODE dbSUPER 0.7 -1.0 -983 2.3 GLIS1 KIF13B ENSG00000254129 GC08M029049 RNA5SP260 PIR42527
GH08G029050 0.5 ENCODE dbSUPER 0.7 -2.7 -2713 0.9 ENSG00000254129 KIF13B GC08M029049 RNA5SP260 PIR42527
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC08M029049 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC08M029049 Gene

Chromosome:
8
Start:
29,048,493 bp from pter
End:
29,048,604 bp from pter
Size:
112 bases
Orientation:
Minus strand

Genomic View for GC08M029049 Gene

Genes around GC08M029049 on UCSC Golden Path with GeneCards custom track

GC08M029049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC08M029049 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC08M029049 Gene

Proteins for GC08M029049 Gene

Post-translational modifications for GC08M029049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC08M029049 Gene

Domains & Families for GC08M029049 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC08M029049 Gene

Function for GC08M029049 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC08M029049 Gene

Localization for GC08M029049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC08M029049 Gene

Pathways & Interactions for GC08M029049 Gene

SuperPathways for GC08M029049 Gene

No Data Available

Interacting Proteins for GC08M029049 Gene

Gene Ontology (GO) - Biological Process for GC08M029049 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC08M029049 Gene

Drugs & Compounds for GC08M029049 Gene

No Compound Related Data Available

Transcripts for GC08M029049 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC08M029049 Gene

No ASD Table

Relevant External Links for GC08M029049 Gene

GeneLoc Exon Structure for
GC08M029049

No data available for mRNA/cDNA for GC08M029049 Gene

Expression for GC08M029049 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC08M029049 Gene

Orthologs for GC08M029049 Gene

No data available for Orthologs and Evolution for GC08M029049 Gene

Paralogs for GC08M029049 Gene

No data available for Paralogs for GC08M029049 Gene

Variants for GC08M029049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC08M029049 Gene

Disorders for GC08M029049 Gene

No disorders were found for GC08M029049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC08M029049 Gene

Publications for GC08M029049 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC08M029049 Gene

Sources for GC08M029049 Gene

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