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Aliases for GC07P148390 Gene

Subcategory (RNA class) for GC07P148390 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07P148390 Gene

No Aliases found

No data available for External Ids for GC07P148390 Gene

Summaries for GC07P148390 Gene

GeneCards Summary for GC07P148390 Gene

GC07P148390 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07P148390 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

View fRNAdb secondary structures for GC07P148390

Additional gene information for GC07P148390 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P148390 Gene

Genomics for GC07P148390 Gene

Regulatory Elements for GC07P148390 Gene

Enhancers for GC07P148390 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H148385 0.4 ENCODE 0.7 -4.4 -4350 0 GATA3 POLR2A GC07P148390 GC07P148333
GH07H148336 1.2 Ensembl ENCODE 0.2 -50.8 -50780 4 ARID4B SIN3A ZNF2 YY1 GLIS2 SP3 REST SREBF1 ZNF610 GLIS1 EZH2 GC07P148333 GC07P148390
GH07H148374 0.4 ENCODE 0.4 -15.0 -15020 1 PKNOX1 POLR2A GC07P148390 GC07P148333
GH07H148334 0.8 ENCODE 0.2 -54.5 -54532 2 PKNOX1 ZBTB21 FEZF1 ZIC2 ZNF324 ZFHX2 ZNF316 POLR2A ZNF366 ZNF600 GC07P148333 GC07P148390
GH07H148367 0.4 ENCODE 0.3 -21.5 -21546 1 MXI1 POLR2A ENSG00000199370 GC07P148390 GC07P148333
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P148390 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P148390 Gene

Chromosome:
7
Start:
148,389,643 bp from pter
End:
148,389,859 bp from pter
Size:
217 bases
Orientation:
Plus strand

Genomic View for GC07P148390 Gene

Genes around GC07P148390 on UCSC Golden Path with GeneCards custom track

GC07P148390 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P148390 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P148390 Gene

ORGUL Member Location for GC07P148390 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P148390 Gene

Proteins for GC07P148390 Gene

Post-translational modifications for GC07P148390 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P148390 Gene

Domains & Families for GC07P148390 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P148390 Gene

Function for GC07P148390 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P148390 Gene

Localization for GC07P148390 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P148390 Gene

Pathways & Interactions for GC07P148390 Gene

SuperPathways for GC07P148390 Gene

No Data Available

Interacting Proteins for GC07P148390 Gene

Gene Ontology (GO) - Biological Process for GC07P148390 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P148390 Gene

Drugs & Compounds for GC07P148390 Gene

No Compound Related Data Available

Transcripts for GC07P148390 Gene

fRNAdb Secondary structures for GC07P148390 Gene

  • FR220464
  • FR186303
  • FR406608

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P148390 Gene

No ASD Table

Relevant External Links for GC07P148390 Gene

GeneLoc Exon Structure for
GC07P148390

No data available for mRNA/cDNA for GC07P148390 Gene

Expression for GC07P148390 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P148390 Gene

Orthologs for GC07P148390 Gene

No data available for Orthologs and Evolution for GC07P148390 Gene

Paralogs for GC07P148390 Gene

No data available for Paralogs for GC07P148390 Gene

Variants for GC07P148390 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P148390 Gene

Disorders for GC07P148390 Gene

No disorders were found for GC07P148390 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P148390 Gene

Publications for GC07P148390 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  3. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  4. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  5. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC07P148390 Gene

Sources for GC07P148390 Gene

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