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Aliases for GC07P140887 Gene

Subcategory (RNA class) for GC07P140887 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07P140887 Gene

No Aliases found

ORGUL Members for GC07P140887 Gene

No data available for External Ids for GC07P140887 Gene

Summaries for GC07P140887 Gene

GeneCards Summary for GC07P140887 Gene

GC07P140887 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07P140887 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P140887 Gene

Genomics for GC07P140887 Gene

Regulatory Elements for GC07P140887 Gene

Enhancers for GC07P140887 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G140881 0.6 ENCODE 0.7 -2.3 -2306 0.1 PKNOX1 MTA2 BHLHE40 JUNB DPF2 TBX21 ARID3A RAD51 TARDBP RELB GC07P140887 PIR42099
GH07G140811 0.8 ENCODE 0.2 -72.8 -72806 0.2 ELF3 PKNOX1 TBL1XR1 ARNT SIN3A ARID4B ZNF2 THRB ZSCAN9 RAD21 BRAF NDUFB2-AS1 NDUFB2 PIR42099 GC07P140887
GH07G140873 0.3 FANTOM5 0.4 -10.9 -10947 0.1 BRAF GC07P140887 PIR42099
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P140887 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P140887 Gene

Chromosome:
7
Start:
140,884,071 bp from pter
End:
140,884,178 bp from pter
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC07P140887 Gene

Genes around GC07P140887 on UCSC Golden Path with GeneCards custom track

GC07P140887 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P140887 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P140887 Gene

Proteins for GC07P140887 Gene

Post-translational modifications for GC07P140887 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P140887 Gene

Domains & Families for GC07P140887 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P140887 Gene

Function for GC07P140887 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P140887 Gene

Localization for GC07P140887 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07P140887 Gene

Pathways & Interactions for GC07P140887 Gene

SuperPathways for GC07P140887 Gene

No Data Available

Interacting Proteins for GC07P140887 Gene

Gene Ontology (GO) - Biological Process for GC07P140887 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P140887 Gene

Drugs & Compounds for GC07P140887 Gene

No Compound Related Data Available

Transcripts for GC07P140887 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P140887 Gene

No ASD Table

Relevant External Links for GC07P140887 Gene

GeneLoc Exon Structure for
GC07P140887

No data available for mRNA/cDNA for GC07P140887 Gene

Expression for GC07P140887 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P140887 Gene

Orthologs for GC07P140887 Gene

No data available for Orthologs and Evolution for GC07P140887 Gene

Paralogs for GC07P140887 Gene

No data available for Paralogs for GC07P140887 Gene

Variants for GC07P140887 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P140887 Gene

Disorders for GC07P140887 Gene

No disorders were found for GC07P140887 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P140887 Gene

Publications for GC07P140887 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin A.G. … Fournier M.J. (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC07P140887 Gene

Sources for GC07P140887 Gene

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