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Aliases for GC07P139893 Gene

Subcategory (RNA class) for GC07P139893 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC07P139893 Gene

No Aliases found

ORGUL Members for GC07P139893 Gene

No data available for External Ids for GC07P139893 Gene

Summaries for GC07P139893 Gene

GeneCards Summary for GC07P139893 Gene

GC07P139893 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC07P139893 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC07P139893

Additional gene information for GC07P139893 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P139893 Gene

Genomics for GC07P139893 Gene

Regulatory Elements for GC07P139893 Gene

Enhancers for GC07P139893 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H139887 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.0 -5049 0 PKNOX1 TBL1XR1 MAX RELA ZNF766 ZSCAN29 ETV6 SMARCE1 NR4A1 TEAD2 TBXAS1 KDM7A GC07P139893 GC07P139864
GH07H139913 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +22.0 22037 4 HDGF PKNOX1 FOXA2 ARNT SIN3A ZNF766 FOS JUNB ZNF592 MEF2D LUC7L2 TBXAS1 KDM7A GC07P139893 LOC105375532
GH07H139889 0.8 FANTOM5 dbSUPER 0.7 -4.0 -4040 0 ZNF316 ZNF512 MAFG NFE2 TBXAS1 KDM7A GC07P139893 GC07P139864
GH07H139900 1 Ensembl ENCODE dbSUPER 0.4 +8.2 8159 1 PKNOX1 FOXA2 RFX1 CEBPB GC07P139893 LOC105375532
GH07H139875 1 ENCODE dbSUPER 0.4 -17.0 -17031 1 PKNOX1 MAX RAD21 ZNF316 NFE2 TRIM24 MAFG REST GABPA NR2F2 HIPK2 TBXAS1 GC07P139864 GC07P139893
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P139893 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P139893 Gene

Chromosome:
7
Start:
139,893,394 bp from pter
End:
139,893,553 bp from pter
Size:
160 bases
Orientation:
Plus strand

Genomic View for GC07P139893 Gene

Genes around GC07P139893 on UCSC Golden Path with GeneCards custom track

GC07P139893 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P139893 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P139893 Gene

ORGUL Member Location for GC07P139893 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P139893 Gene

Proteins for GC07P139893 Gene

Post-translational modifications for GC07P139893 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P139893 Gene

Domains & Families for GC07P139893 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P139893 Gene

Function for GC07P139893 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P139893 Gene

Localization for GC07P139893 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P139893 Gene

Pathways & Interactions for GC07P139893 Gene

SuperPathways for GC07P139893 Gene

No Data Available

Interacting Proteins for GC07P139893 Gene

Gene Ontology (GO) - Biological Process for GC07P139893 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P139893 Gene

Drugs & Compounds for GC07P139893 Gene

No Compound Related Data Available

Transcripts for GC07P139893 Gene

fRNAdb Secondary structures for GC07P139893 Gene

  • FR145995
  • FR307254

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P139893 Gene

No ASD Table

Relevant External Links for GC07P139893 Gene

GeneLoc Exon Structure for
GC07P139893

No data available for mRNA/cDNA for GC07P139893 Gene

Expression for GC07P139893 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P139893 Gene

Orthologs for GC07P139893 Gene

No data available for Orthologs and Evolution for GC07P139893 Gene

Paralogs for GC07P139893 Gene

No data available for Paralogs for GC07P139893 Gene

Variants for GC07P139893 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P139893 Gene

Disorders for GC07P139893 Gene

No disorders were found for GC07P139893 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P139893 Gene

Publications for GC07P139893 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC07P139893 Gene

Sources for GC07P139893 Gene

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