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Aliases for GC07P130029 Gene

Subcategory (RNA class) for GC07P130029 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC07P130029 Gene

No Aliases found

ORGUL Members for GC07P130029 Gene

No data available for External Ids for GC07P130029 Gene

Summaries for GC07P130029 Gene

GeneCards Summary for GC07P130029 Gene

GC07P130029 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC07P130029 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P130029 Gene

Genomics for GC07P130029 Gene

Regulatory Elements for GC07P130029 Gene

Enhancers for GC07P130029 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G130024 1.3 Ensembl ENCODE 0.7 -1.4 -1390 2.6 HDGF PKNOX1 CREB3L1 ARNT SIN3A ZNF766 FOS KLF13 DEK ZHX2 ZC3HC1 ENSG00000244036 UBE2H ENSG00000199516 GC07P130029 GC07M129961
GH07G130008 1.6 FANTOM5 Ensembl ENCODE 0.4 -17.4 -17405 3.1 PKNOX1 CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF766 ZNF143 ZNF207 FOS ENSG00000199516 UBE2H KLHDC10 ZC3HC1 ENSG00000273319 NRF1 GC07P130029 GC07M129961
GH07G129968 1.5 Ensembl ENCODE dbSUPER 0.2 -57.3 -57307 2.7 HDGF SIN3A TCF12 GATA2 KLF7 FOS ZHX2 REST ZNF592 ZNF579 GC07M129961 GC07P130029
GH07G130020 0.7 ENCODE 0.4 -5.7 -5720 3.0 LEF1 CBX3 TSC22D4 ZIC2 ZNF316 CBX5 ADNP TRIM24 MAFK ZNF280D ZC3HC1 ENSG00000199516 UBE2H GC07P130029 GC07M129961
GH07G129991 0.8 ENCODE 0.3 -36.7 -36721 0.2 MLX ARID4B ZSCAN9 RAD21 RARA ZNF335 CREM PPARG NR2F2 TGIF2 UBE2H ENSG00000199516 GC07M129961 GC07P130029
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P130029 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P130029 Gene

Chromosome:
7
Start:
130,027,276 bp from pter
End:
130,027,397 bp from pter
Size:
122 bases
Orientation:
Plus strand

Genomic View for GC07P130029 Gene

Genes around GC07P130029 on UCSC Golden Path with GeneCards custom track

GC07P130029 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P130029 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P130029 Gene

Proteins for GC07P130029 Gene

Post-translational modifications for GC07P130029 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P130029 Gene

Domains & Families for GC07P130029 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P130029 Gene

Function for GC07P130029 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P130029 Gene

Localization for GC07P130029 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07P130029 Gene

Pathways & Interactions for GC07P130029 Gene

SuperPathways for GC07P130029 Gene

No Data Available

Interacting Proteins for GC07P130029 Gene

Gene Ontology (GO) - Biological Process for GC07P130029 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P130029 Gene

Drugs & Compounds for GC07P130029 Gene

No Compound Related Data Available

Transcripts for GC07P130029 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P130029 Gene

No ASD Table

Relevant External Links for GC07P130029 Gene

GeneLoc Exon Structure for
GC07P130029

No data available for mRNA/cDNA for GC07P130029 Gene

Expression for GC07P130029 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P130029 Gene

Orthologs for GC07P130029 Gene

No data available for Orthologs and Evolution for GC07P130029 Gene

Paralogs for GC07P130029 Gene

No data available for Paralogs for GC07P130029 Gene

Variants for GC07P130029 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P130029 Gene

Disorders for GC07P130029 Gene

No disorders were found for GC07P130029 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P130029 Gene

Publications for GC07P130029 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M. … Barciszewski J. (Nucleic Acids Res. 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov M.M. … Noller H.F. (Science 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles M.A. … Klug A. (J. Mol. Biol. 2000) 1

Products for GC07P130029 Gene

Sources for GC07P130029 Gene

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