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Aliases for GC07P107227 Gene

Subcategory (RNA class) for GC07P107227 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07P107227 Gene

No Aliases found

ORGUL Members for GC07P107227 Gene

No data available for External Ids for GC07P107227 Gene

Summaries for GC07P107227 Gene

GeneCards Summary for GC07P107227 Gene

GC07P107227 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07P107227 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P107227 Gene

Genomics for GC07P107227 Gene

Regulatory Elements for GC07P107227 Gene

Enhancers for GC07P107227 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G107230 0.8 ENCODE 0.7 +3.4 3436 0.2 PKNOX1 NFRKB YY1 ELK1 GATA2 RELB FOS JUNB GATAD2B TBX21 GC07P107227 GC07M107216
GH07G107208 1.1 ENCODE dbSUPER 0.4 -18.3 -18285 0.2 HDAC1 CBX3 PKNOX1 CHAMP1 TCF12 GATA2 FOS KLF13 CAVIN1 ZNF592 COG5 GC07P107227 ENSG00000272072
GH07G107209 0.9 ENCODE dbSUPER 0.4 -18.8 -18825 0.1 ZNF197 L3MBTL2 RNF2 NRF1 ZNF175 MNT CHAMP1 POLR2H GATA2 ATF3 ENSG00000272072 GC07P107227
GH07G107196 0.9 dbSUPER 0.3 -25.8 -25766 9.4 PKNOX1 BMI1 RAD21 CHAMP1 ZNF766 FOS ZNF654 CAVIN1 SMAD5 CEBPB COG5 HBP1 ENSG00000272072 GC07P107227
GH07G107269 0.2 ENCODE 0.3 +43.0 42979 1.1 ENSG00000238832 HBP1 GC07M107216 GC07P107227
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P107227 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P107227 Gene

Chromosome:
7
Start:
107,227,055 bp from pter
End:
107,227,213 bp from pter
Size:
159 bases
Orientation:
Plus strand

Genomic View for GC07P107227 Gene

Genes around GC07P107227 on UCSC Golden Path with GeneCards custom track

GC07P107227 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P107227 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P107227 Gene

Proteins for GC07P107227 Gene

Post-translational modifications for GC07P107227 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P107227 Gene

Domains & Families for GC07P107227 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P107227 Gene

Function for GC07P107227 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P107227 Gene

Localization for GC07P107227 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07P107227 Gene

Pathways & Interactions for GC07P107227 Gene

SuperPathways for GC07P107227 Gene

No Data Available

Interacting Proteins for GC07P107227 Gene

Gene Ontology (GO) - Biological Process for GC07P107227 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P107227 Gene

Drugs & Compounds for GC07P107227 Gene

No Compound Related Data Available

Transcripts for GC07P107227 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P107227 Gene

No ASD Table

Relevant External Links for GC07P107227 Gene

GeneLoc Exon Structure for
GC07P107227

No data available for mRNA/cDNA for GC07P107227 Gene

Expression for GC07P107227 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P107227 Gene

Orthologs for GC07P107227 Gene

No data available for Orthologs and Evolution for GC07P107227 Gene

Paralogs for GC07P107227 Gene

No data available for Paralogs for GC07P107227 Gene

Variants for GC07P107227 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P107227 Gene

Disorders for GC07P107227 Gene

No disorders were found for GC07P107227 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P107227 Gene

Publications for GC07P107227 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba P.S. … Laird-Offringa I.A. (J. Biol. Chem. 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  3. Crystal structure at 1.92-A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C. … Nagai K. (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L. … Rosbash M. (Proc. Natl. Acad. Sci. U.S.A. 1990) 1

Products for GC07P107227 Gene

Sources for GC07P107227 Gene

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