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Aliases for GC07P106209 Gene

Subcategory (RNA class) for GC07P106209 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07P106209 Gene

No Aliases found

ORGUL Members for GC07P106209 Gene

No data available for External Ids for GC07P106209 Gene

Summaries for GC07P106209 Gene

GeneCards Summary for GC07P106209 Gene

GC07P106209 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07P106209 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

View fRNAdb secondary structures for GC07P106209

Additional gene information for GC07P106209 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P106209 Gene

Genomics for GC07P106209 Gene

Regulatory Elements for GC07P106209 Gene

Enhancers for GC07P106209 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H106176 1.2 Ensembl ENCODE 0.3 -31.3 -31265 0 ATF1 ARNT ZNF2 YY1 ZNF766 CBX5 ZNF143 ZNF207 ATF7 RUNX3 GC07P106209 GC07P106126
GH07H106178 1 Ensembl ENCODE 0.3 -29.4 -29364 0 CTCF FOXA2 TAF1 MAX RAD21 YY1 HNF4G SMC3 RFX1 ZNF654 GC07P106209 GC07P106126
GH07H106166 0.8 ENCODE 0.3 -41.3 -41276 0 CTCF ATF1 ARNT RAD21 TEAD3 CC2D1A FOXK2 SMC3 ZNF143 RCOR1 SYPL1 GC07P106126 GC07P106209
GH07H106153 1.1 Ensembl ENCODE 0.2 -54.2 -54227 0 CTCF RB1 GTF2E2 BMI1 ZNF2 RAD21 TEAD3 CC2D1A ZFHX2 CTBP1 SYPL1 GC07P106126 GC07P106209
GH07H106179 0.7 ENCODE 0.3 -28.2 -28176 0 FOXA2 NFIA TAF1 MAX MNT REST RAD21 YY1 JUND ATF3 GC07P106209 GC07P106126
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P106209 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P106209 Gene

Chromosome:
7
Start:
106,208,165 bp from pter
End:
106,208,267 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for GC07P106209 Gene

Genes around GC07P106209 on UCSC Golden Path with GeneCards custom track

GC07P106209 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P106209 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P106209 Gene

ORGUL Member Location for GC07P106209 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P106209 Gene

Proteins for GC07P106209 Gene

Post-translational modifications for GC07P106209 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P106209 Gene

Domains & Families for GC07P106209 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P106209 Gene

Function for GC07P106209 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P106209 Gene

Localization for GC07P106209 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P106209 Gene

Pathways & Interactions for GC07P106209 Gene

SuperPathways for GC07P106209 Gene

No Data Available

Interacting Proteins for GC07P106209 Gene

Gene Ontology (GO) - Biological Process for GC07P106209 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P106209 Gene

Drugs & Compounds for GC07P106209 Gene

No Compound Related Data Available

Transcripts for GC07P106209 Gene

fRNAdb Secondary structures for GC07P106209 Gene

  • FR090459
  • FR346675

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P106209 Gene

No ASD Table

Relevant External Links for GC07P106209 Gene

GeneLoc Exon Structure for
GC07P106209

No data available for mRNA/cDNA for GC07P106209 Gene

Expression for GC07P106209 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P106209 Gene

Orthologs for GC07P106209 Gene

No data available for Orthologs and Evolution for GC07P106209 Gene

Paralogs for GC07P106209 Gene

No data available for Paralogs for GC07P106209 Gene

Variants for GC07P106209 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P106209 Gene

Disorders for GC07P106209 Gene

No disorders were found for GC07P106209 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P106209 Gene

Publications for GC07P106209 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07P106209 Gene

Sources for GC07P106209 Gene

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