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Aliases for GC07P098023 Gene

Subcategory (RNA class) for GC07P098023 Gene

SRP

Quality Score for this RNA gene is

1

Aliases for GC07P098023 Gene

No Aliases found

ORGUL Members for GC07P098023 Gene

No data available for External Ids for GC07P098023 Gene

Summaries for GC07P098023 Gene

GeneCards Summary for GC07P098023 Gene

GC07P098023 is an RNA Gene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for GC07P098023 Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

View fRNAdb secondary structures for GC07P098023

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P098023 Gene

Genomics for GC07P098023 Gene

Regulatory Elements for GC07P098023 Gene

Enhancers for GC07P098023 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G098021 0.9 ENCODE 0.7 -2.0 -2025 0.2 ELF3 HDGF PKNOX1 ZNF2 THRB ZNF48 RAD21 ZNF121 ZNF366 SCRT2 LMTK2 ENSG00000272950 GC07P098023 RN7SL478P
GH07G098022 0.8 ENCODE 0.7 -1.8 -1785 0.1 ELF3 HDGF PKNOX1 ZNF2 THRB ZNF48 RAD21 ZNF121 ZNF366 SCRT2 LMTK2 GC07P098023 RN7SL478P
GH07G098013 0.7 ENCODE 0.4 -10.1 -10125 0.2 CTCF SAP130 ARID4B CEBPG RAD21 TEAD3 SMC3 PRDM10 GATAD2A ZNF654 GC07P098023 RN7SL478P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P098023 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P098023 Gene

Chromosome:
7
Start:
98,023,728 bp from pter
End:
98,023,967 bp from pter
Size:
240 bases
Orientation:
Plus strand

Genomic View for GC07P098023 Gene

Genes around GC07P098023 on UCSC Golden Path with GeneCards custom track

GC07P098023 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P098023 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P098023 Gene

ORGUL Member Location for GC07P098023 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P098023 Gene

Proteins for GC07P098023 Gene

Post-translational modifications for GC07P098023 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P098023 Gene

Domains & Families for GC07P098023 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P098023 Gene

Function for GC07P098023 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P098023 Gene

Localization for GC07P098023 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07P098023 Gene

Pathways & Interactions for GC07P098023 Gene

SuperPathways for GC07P098023 Gene

No Data Available

Interacting Proteins for GC07P098023 Gene

Gene Ontology (GO) - Biological Process for GC07P098023 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P098023 Gene

Drugs & Compounds for GC07P098023 Gene

No Compound Related Data Available

Transcripts for GC07P098023 Gene

fRNAdb Secondary structures for GC07P098023 Gene

  • FR080894

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P098023 Gene

No ASD Table

Relevant External Links for GC07P098023 Gene

GeneLoc Exon Structure for
GC07P098023

No data available for mRNA/cDNA for GC07P098023 Gene

Expression for GC07P098023 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P098023 Gene

Orthologs for GC07P098023 Gene

No data available for Orthologs and Evolution for GC07P098023 Gene

Paralogs for GC07P098023 Gene

No data available for Paralogs for GC07P098023 Gene

Variants for GC07P098023 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P098023 Gene

Disorders for GC07P098023 Gene

No disorders were found for GC07P098023 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P098023 Gene

Publications for GC07P098023 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  2. Structure, function and evolution of the signal recognition particle. (PMID: 12853463) Nagai K. … Jovine L. (EMBO J. 2003) 1
  3. Structure of the phylogenetically most conserved domain of SRP RNA. (PMID: 10580470) Schmitz U. … James T.L. (RNA 1999) 1
  4. The signal recognition particle (SRP) database. (PMID: 1317959) Zwieb C. … Larsen N. (Nucleic Acids Res. 1992) 1

Products for GC07P098023 Gene

Sources for GC07P098023 Gene

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