Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC07P095099 Gene

Subcategory (RNA class) for GC07P095099 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07P095099 Gene

No Aliases found

ORGUL Members for GC07P095099 Gene

No data available for External Ids for GC07P095099 Gene

Summaries for GC07P095099 Gene

GeneCards Summary for GC07P095099 Gene

GC07P095099 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07P095099 Gene

  • U4_snRNA: U4 small nuclear RNA (U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6.

View fRNAdb secondary structures for GC07P095099

Additional gene information for GC07P095099 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P095099 Gene

Genomics for GC07P095099 Gene

Regulatory Elements for GC07P095099 Gene

Enhancers for GC07P095099 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H095066 1.1 ENCODE dbSUPER 0.3 -30.9 -30859 1 ELF3 PKNOX1 FOXA2 ZNF133 FEZF1 ZIC2 HIC1 CTBP1 POLR2A ZSCAN5C RNU4-16P PPP1R9A GC07P095099 HINT1P2
GH07H095095 0.4 ENCODE 0.7 -2.3 -2343 0 NR2F2 GC07P095099 HINT1P2
GH07H095055 0.7 ENCODE dbSUPER 0.3 -40.9 -40924 3 PRDM6 BCL6B ZNF843 RNU4-16P PEG10 HINT1P2 GC07P095099
GH07H095025 0.9 ENCODE 0.2 -70.6 -70565 3 ELF3 FOXA2 MLX ARID4B RARA CREM MIXL1 HMG20B MIER2 PPARG PPP1R9A HINT1P2 GC07P095099
GH07H095088 0.4 ENCODE 0.4 -9.5 -9515 0 EGR2 GC07P095099 HINT1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P095099 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P095099 Gene

Chromosome:
7
Start:
95,098,226 bp from pter
End:
95,098,370 bp from pter
Size:
145 bases
Orientation:
Plus strand

Genomic View for GC07P095099 Gene

Genes around GC07P095099 on UCSC Golden Path with GeneCards custom track

GC07P095099 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P095099 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P095099 Gene

ORGUL Member Location for GC07P095099 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P095099 Gene

Proteins for GC07P095099 Gene

Post-translational modifications for GC07P095099 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P095099 Gene

Domains & Families for GC07P095099 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P095099 Gene

Function for GC07P095099 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P095099 Gene

Localization for GC07P095099 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P095099 Gene

Pathways & Interactions for GC07P095099 Gene

SuperPathways for GC07P095099 Gene

No Data Available

Interacting Proteins for GC07P095099 Gene

Gene Ontology (GO) - Biological Process for GC07P095099 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P095099 Gene

Drugs & Compounds for GC07P095099 Gene

No Compound Related Data Available

Transcripts for GC07P095099 Gene

fRNAdb Secondary structures for GC07P095099 Gene

  • FR043215
  • FR038965

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P095099 Gene

No ASD Table

Relevant External Links for GC07P095099 Gene

GeneLoc Exon Structure for
GC07P095099

No data available for mRNA/cDNA for GC07P095099 Gene

Expression for GC07P095099 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P095099 Gene

Orthologs for GC07P095099 Gene

No data available for Orthologs and Evolution for GC07P095099 Gene

Paralogs for GC07P095099 Gene

No data available for Paralogs for GC07P095099 Gene

Variants for GC07P095099 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P095099 Gene

Disorders for GC07P095099 Gene

No disorders were found for GC07P095099 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P095099 Gene

Publications for GC07P095099 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. (PMID: 11163207) Vidovic I … Ficner R (Molecular cell 2000) 1
  3. A spliceosomal recycling factor that reanneals U4 and U6 small nuclear ribonucleoprotein particles. (PMID: 9452384) Raghunathan PL … Guthrie C (Science (New York, N.Y.) 1998) 1
  4. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  5. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC07P095099 Gene

Sources for GC07P095099 Gene

Content
Loading form....