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Aliases for GC07P083018 Gene

Subcategory (RNA class) for GC07P083018 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC07P083018 Gene

No Aliases found

ORGUL Members for GC07P083018 Gene

No data available for External Ids for GC07P083018 Gene

Summaries for GC07P083018 Gene

GeneCards Summary for GC07P083018 Gene

GC07P083018 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC07P083018 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC07P083018 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P083018 Gene

Genomics for GC07P083018 Gene

Regulatory Elements for GC07P083018 Gene

Enhancers for GC07P083018 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H082699 1 Ensembl ENCODE 0.1 -317.7 -317660 1 PKNOX1 NFIB JUN BMI1 ZBTB7B ZNF7 MTA3 CTBP1 GATA3 ZNF207 LOC105375376 GC07P083018
GH07H082804 0.9 Ensembl ENCODE 0.1 -212.3 -212327 1 JUN MAX EP300 JUND MAFF POLR2A FOS RCOR1 MAFK LOC105375376 GC07P083018
GH07H082714 0.7 ENCODE 0.1 -302.7 -302702 1 SMARCA5 ZNF687 EBF1 ZNF592 RELA IKZF1 EED NFE2 RUNX3 IKZF2 LOC105375376 GC07P083018
GH07H082727 0.6 ENCODE 0.1 -290.8 -290808 0 CTCF ZNF654 NFIB TRIM22 RAD21 RFX5 NFIC POLR3A ZNF143 SMC3 LOC105375376 GC07P083018
GH07H082858 0.4 ENCODE 0.1 -158.3 -158272 1 JUN GC07P083018 LOC105375376
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P083018 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P083018 Gene

Chromosome:
7
Start:
83,017,897 bp from pter
End:
83,018,011 bp from pter
Size:
115 bases
Orientation:
Plus strand

Genomic View for GC07P083018 Gene

Genes around GC07P083018 on UCSC Golden Path with GeneCards custom track

GC07P083018 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P083018 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P083018 Gene

Proteins for GC07P083018 Gene

Post-translational modifications for GC07P083018 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P083018 Gene

Domains & Families for GC07P083018 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P083018 Gene

Function for GC07P083018 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P083018 Gene

Localization for GC07P083018 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P083018 Gene

Pathways & Interactions for GC07P083018 Gene

SuperPathways for GC07P083018 Gene

No Data Available

Interacting Proteins for GC07P083018 Gene

Gene Ontology (GO) - Biological Process for GC07P083018 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P083018 Gene

Drugs & Compounds for GC07P083018 Gene

No Compound Related Data Available

Transcripts for GC07P083018 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P083018 Gene

No ASD Table

Relevant External Links for GC07P083018 Gene

GeneLoc Exon Structure for
GC07P083018

No data available for mRNA/cDNA for GC07P083018 Gene

Expression for GC07P083018 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P083018 Gene

Orthologs for GC07P083018 Gene

No data available for Orthologs and Evolution for GC07P083018 Gene

Paralogs for GC07P083018 Gene

No data available for Paralogs for GC07P083018 Gene

Variants for GC07P083018 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P083018 Gene

Disorders for GC07P083018 Gene

No disorders were found for GC07P083018 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P083018 Gene

Publications for GC07P083018 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC07P083018 Gene

Sources for GC07P083018 Gene

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