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Aliases for GC07P028580 Gene

Subcategory (RNA class) for GC07P028580 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC07P028580 Gene

No Aliases found

ORGUL Members for GC07P028580 Gene

No data available for External Ids for GC07P028580 Gene

Summaries for GC07P028580 Gene

GeneCards Summary for GC07P028580 Gene

GC07P028580 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC07P028580 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC07P028580

Additional gene information for GC07P028580 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P028580 Gene

Genomics for GC07P028580 Gene

Regulatory Elements for GC07P028580 Gene

Enhancers for GC07P028580 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H028572 1.2 Ensembl ENCODE 0.4 -7.3 -7306 1 TBL1XR1 NFIB KLF17 BMI1 FEZF1 BATF ZBTB40 GLIS2 SCRT2 RCOR1 GC07P028580 GC07M028337
GH07H028574 0.8 ENCODE 0.4 -6.5 -6532 0 TBL1XR1 FEZF1 BATF EED ZNF600 ATF7 ETV6 RUNX3 IKZF2 CREM GC07P028580 GC07M028337
GH07H028570 0.8 ENCODE 0.4 -9.5 -9511 1 HDGF PKNOX1 IRF3 BMI1 CEBPG FOSL1 POLR2A EED ATF7 ETV6 GC07P028580 GC07M028337
GH07H028579 0.4 ENCODE 0.7 -1.0 -972 0 NR2F2 GC07P028580 GC07M028337
GH07H028508 1.4 FANTOM5 Ensembl ENCODE 0.2 -71.3 -71253 2 HDGF RB1 MAX BMI1 EBF1 BATF EED ZNF143 ZNF207 ATF7 GC07M028337 GC07P028580
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P028580 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P028580 Gene

Chromosome:
7
Start:
28,580,609 bp from pter
End:
28,580,806 bp from pter
Size:
198 bases
Orientation:
Plus strand

Genomic View for GC07P028580 Gene

Genes around GC07P028580 on UCSC Golden Path with GeneCards custom track

GC07P028580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P028580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P028580 Gene

ORGUL Member Location for GC07P028580 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P028580 Gene

Proteins for GC07P028580 Gene

Post-translational modifications for GC07P028580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P028580 Gene

Domains & Families for GC07P028580 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P028580 Gene

Function for GC07P028580 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P028580 Gene

Localization for GC07P028580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P028580 Gene

Pathways & Interactions for GC07P028580 Gene

SuperPathways for GC07P028580 Gene

No Data Available

Interacting Proteins for GC07P028580 Gene

Gene Ontology (GO) - Biological Process for GC07P028580 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P028580 Gene

Drugs & Compounds for GC07P028580 Gene

No Compound Related Data Available

Transcripts for GC07P028580 Gene

fRNAdb Secondary structures for GC07P028580 Gene

  • FR118528
  • FR375301

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P028580 Gene

No ASD Table

Relevant External Links for GC07P028580 Gene

GeneLoc Exon Structure for
GC07P028580

No data available for mRNA/cDNA for GC07P028580 Gene

Expression for GC07P028580 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P028580 Gene

Orthologs for GC07P028580 Gene

No data available for Orthologs and Evolution for GC07P028580 Gene

Paralogs for GC07P028580 Gene

No data available for Paralogs for GC07P028580 Gene

Variants for GC07P028580 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P028580 Gene

Disorders for GC07P028580 Gene

No disorders were found for GC07P028580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P028580 Gene

Publications for GC07P028580 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC07P028580 Gene

Sources for GC07P028580 Gene

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