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Aliases for GC07P025264 Gene

Subcategory (RNA class) for GC07P025264 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07P025264 Gene

No Aliases found

ORGUL Members for GC07P025264 Gene

No data available for External Ids for GC07P025264 Gene

Summaries for GC07P025264 Gene

GeneCards Summary for GC07P025264 Gene

GC07P025264 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07P025264 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

Additional gene information for GC07P025264 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P025264 Gene

Genomics for GC07P025264 Gene

Regulatory Elements for GC07P025264 Gene

Enhancers for GC07P025264 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H025259 1 Ensembl ENCODE 0.7 -4.8 -4801 0 CTCF RB1 MAX YBX1 ZNF2 RAD21 CC2D1A GATA3 ZBTB48 SCRT2 GC07P025264 GC07P025230
GH07H025260 0.9 Ensembl ENCODE 0.7 -3.0 -3012 1 ETV1 ELF1 GABPA OSR2 ZNF664 PRDM6 GATA3 ZBTB48 ZNF341 GC07P025264 GC07P025230
GH07H025244 0.2 ENCODE 0.4 -19.8 -19769 0 GC07P025230 GC07P025264
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P025264 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P025264 Gene

Chromosome:
7
Start:
25,264,655 bp from pter
End:
25,264,881 bp from pter
Size:
227 bases
Orientation:
Plus strand

Genomic View for GC07P025264 Gene

Genes around GC07P025264 on UCSC Golden Path with GeneCards custom track

GC07P025264 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P025264 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P025264 Gene

Proteins for GC07P025264 Gene

Post-translational modifications for GC07P025264 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P025264 Gene

Domains & Families for GC07P025264 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P025264 Gene

Function for GC07P025264 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P025264 Gene

Localization for GC07P025264 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P025264 Gene

Pathways & Interactions for GC07P025264 Gene

SuperPathways for GC07P025264 Gene

No Data Available

Interacting Proteins for GC07P025264 Gene

Gene Ontology (GO) - Biological Process for GC07P025264 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P025264 Gene

Drugs & Compounds for GC07P025264 Gene

No Compound Related Data Available

Transcripts for GC07P025264 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P025264 Gene

No ASD Table

Relevant External Links for GC07P025264 Gene

GeneLoc Exon Structure for
GC07P025264

No data available for mRNA/cDNA for GC07P025264 Gene

Expression for GC07P025264 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P025264 Gene

Orthologs for GC07P025264 Gene

No data available for Orthologs and Evolution for GC07P025264 Gene

Paralogs for GC07P025264 Gene

No data available for Paralogs for GC07P025264 Gene

Variants for GC07P025264 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P025264 Gene

Disorders for GC07P025264 Gene

No disorders were found for GC07P025264 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P025264 Gene

Publications for GC07P025264 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W … Terns MP (Molecular and cellular biology 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1

Products for GC07P025264 Gene

Sources for GC07P025264 Gene

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