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Aliases for GC07P005180 Gene

Subcategory (RNA class) for GC07P005180 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07P005180 Gene

No Aliases found

ORGUL Members for GC07P005180 Gene

No data available for External Ids for GC07P005180 Gene

Summaries for GC07P005180 Gene

GeneCards Summary for GC07P005180 Gene

GC07P005180 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07P005180 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

View fRNAdb secondary structures for GC07P005180

Additional gene information for GC07P005180 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P005180 Gene

Genomics for GC07P005180 Gene

Regulatory Elements for GC07P005180 Gene

Enhancers for GC07P005180 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H005176 0.9 Ensembl ENCODE 0.7 -2.8 -2809 0 BCOR ATF1 RAD21 ATF2 GABPA JUND ATF3 HNF4A KDM1A ATF7 GC07P005180 ZNF890P
GH07H005144 0.7 ENCODE 0.3 -35.5 -35473 0 IRF3 MAX SIN3A BMI1 EBF1 ZNF143 RUNX3 IKZF2 CREM THAP11 OR10AH1P ZNF890P GC07P005180
GH07H005149 0.2 Ensembl 0.3 -30.4 -30425 0 WIPI2 OR10AH1P RNF216P1 EIF2AK1 PMS2 ZNF890P GC07P005180
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P005180 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P005180 Gene

Chromosome:
7
Start:
5,180,057 bp from pter
End:
5,180,162 bp from pter
Size:
106 bases
Orientation:
Plus strand

Genomic View for GC07P005180 Gene

Genes around GC07P005180 on UCSC Golden Path with GeneCards custom track

GC07P005180 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P005180 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07P005180 Gene

ORGUL Member Location for GC07P005180 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P005180 Gene

Proteins for GC07P005180 Gene

Post-translational modifications for GC07P005180 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P005180 Gene

Domains & Families for GC07P005180 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P005180 Gene

Function for GC07P005180 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P005180 Gene

Localization for GC07P005180 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07P005180 Gene

Pathways & Interactions for GC07P005180 Gene

SuperPathways for GC07P005180 Gene

No Data Available

Interacting Proteins for GC07P005180 Gene

Gene Ontology (GO) - Biological Process for GC07P005180 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P005180 Gene

Drugs & Compounds for GC07P005180 Gene

No Compound Related Data Available

Transcripts for GC07P005180 Gene

fRNAdb Secondary structures for GC07P005180 Gene

  • FR349751
  • FR276030

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P005180 Gene

No ASD Table

Relevant External Links for GC07P005180 Gene

GeneLoc Exon Structure for
GC07P005180

No data available for mRNA/cDNA for GC07P005180 Gene

Expression for GC07P005180 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P005180 Gene

Orthologs for GC07P005180 Gene

No data available for Orthologs and Evolution for GC07P005180 Gene

Paralogs for GC07P005180 Gene

No data available for Paralogs for GC07P005180 Gene

Variants for GC07P005180 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P005180 Gene

Disorders for GC07P005180 Gene

No disorders were found for GC07P005180 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P005180 Gene

Publications for GC07P005180 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07P005180 Gene

Sources for GC07P005180 Gene

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