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Aliases for GC07P004689 Gene

Subcategory (RNA class) for GC07P004689 Gene

snoRNA

Quality Score for this RNA gene is

1

Aliases for GC07P004689 Gene

No Aliases found

ORGUL Members for GC07P004689 Gene

No data available for External Ids for GC07P004689 Gene

Summaries for GC07P004689 Gene

GeneCards Summary for GC07P004689 Gene

GC07P004689 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07P004689 Gene

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07P004689 Gene

Genomics for GC07P004689 Gene

Regulatory Elements for GC07P004689 Gene

Enhancers for GC07P004689 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G004691 1 Ensembl ENCODE dbSUPER 0.7 +2.7 2739 1.2 ZNF687 CREB1 SIN3A ZNF24 GC07P004689 GC07M004681
GH07G004704 1.6 Ensembl ENCODE dbSUPER 0.4 +17.1 17117 4.4 FOXA2 ARID4B SIN3A FEZF1 ZBTB7B YY1 FOS KLF13 DEK SP3 GC07M004681 GC07P004689
GH07G004699 1.5 Ensembl ENCODE dbSUPER 0.4 +11.1 11100 2.3 HDGF FOXA2 ATF1 ARNT CREB3L1 ARID4B YY1 TCF12 ZNF121 ELK1 AP5Z1 GC07M004681 GC07P004689
GH07G004702 1.4 Ensembl ENCODE dbSUPER 0.4 +13.9 13929 1.7 MLX ARID4B DMAP1 ZNF48 ZNF121 MXD4 ZHX2 PPARG KAT8 NFIL3 AP5Z1 GC07M004681 GC07P004689
GH07G004693 1.2 Ensembl ENCODE dbSUPER 0.4 +5.1 5100 3.2 PKNOX1 MAFG ZNF316 POLR2A NFE2L1 ZBTB33 KDM1A NFE2 FOS EMSY AP5Z1 GC07P004689 GC07M004681
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07P004689 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07P004689 Gene

Chromosome:
7
Start:
4,689,479 bp from pter
End:
4,689,583 bp from pter
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC07P004689 Gene

Genes around GC07P004689 on UCSC Golden Path with GeneCards custom track

GC07P004689 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07P004689 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07P004689 Gene

Proteins for GC07P004689 Gene

Post-translational modifications for GC07P004689 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07P004689 Gene

Domains & Families for GC07P004689 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07P004689 Gene

Function for GC07P004689 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07P004689 Gene

Localization for GC07P004689 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07P004689 Gene

Pathways & Interactions for GC07P004689 Gene

SuperPathways for GC07P004689 Gene

No Data Available

Interacting Proteins for GC07P004689 Gene

Gene Ontology (GO) - Biological Process for GC07P004689 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07P004689 Gene

Drugs & Compounds for GC07P004689 Gene

No Compound Related Data Available

Transcripts for GC07P004689 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07P004689 Gene

No ASD Table

Relevant External Links for GC07P004689 Gene

GeneLoc Exon Structure for
GC07P004689

No data available for mRNA/cDNA for GC07P004689 Gene

Expression for GC07P004689 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07P004689 Gene

Orthologs for GC07P004689 Gene

No data available for Orthologs and Evolution for GC07P004689 Gene

Paralogs for GC07P004689 Gene

No data available for Paralogs for GC07P004689 Gene

Variants for GC07P004689 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07P004689 Gene

Disorders for GC07P004689 Gene

No disorders were found for GC07P004689 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07P004689 Gene

Publications for GC07P004689 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C. … Chen R. (Nucleic Acids Res. 2005) 1
  2. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C. … Bachellerie J.P. (J. Mol. Biol. 2000) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin A.G. … Fournier M.J. (Cell 1996) 1

Products for GC07P004689 Gene

Sources for GC07P004689 Gene

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