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Aliases for GC07M156563 Gene

Subcategory (RNA class) for GC07M156563 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07M156563 Gene

No Aliases found

ORGUL Members for GC07M156563 Gene

No data available for External Ids for GC07M156563 Gene

Summaries for GC07M156563 Gene

GeneCards Summary for GC07M156563 Gene

GC07M156563 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M156563 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC07M156563 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M156563 Gene

Genomics for GC07M156563 Gene

Regulatory Elements for GC07M156563 Gene

Enhancers for GC07M156563 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H156560 0.5 ENCODE 0.7 +2.9 2931 0 CTCF KLF16 REST RAD21 GC07M156563 LINC00244
GH07H156544 0.8 ENCODE 0.4 +18.2 18215 1 CTCF TAL1 ZFP64 MAX RAD21 TEAD3 ZNF316 HNF4G HOMEZ MAFK LINC00244 GC07M156563
GH07H156614 1.6 FANTOM5 Ensembl ENCODE 0.2 -52.8 -52764 3 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 ATF7 SP5 MXD4 LINC01006 RNF32 NOM1 C7orf13 MNX1 GC07P156625 GC07M156563
GH07H156607 1.5 FANTOM5 Ensembl ENCODE 0.2 -46.8 -46838 5 PKNOX1 FOXA2 MLX ARID4B DMAP1 TCF12 GATA2 SP5 REST MIER2 LINC01006 RNF32 C7orf13 GC07P156625 GC07M156563
GH07H156618 0.7 ENCODE 0.2 -56.6 -56649 2 KLF1 CEBPG ZNF7 RELA IRF9 RFX1 ZNF740 CAVIN1 NR4A1 CEBPB LINC01006 C7orf13 RNF32 LOC101927858 GC07P156625 GC07M156563
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M156563 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M156563 Gene

Chromosome:
7
Start:
156,563,138 bp from pter
End:
156,563,222 bp from pter
Size:
85 bases
Orientation:
Minus strand

Genomic View for GC07M156563 Gene

Genes around GC07M156563 on UCSC Golden Path with GeneCards custom track

GC07M156563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M156563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M156563 Gene

Proteins for GC07M156563 Gene

Post-translational modifications for GC07M156563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M156563 Gene

Domains & Families for GC07M156563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M156563 Gene

Function for GC07M156563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M156563 Gene

Localization for GC07M156563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M156563 Gene

Pathways & Interactions for GC07M156563 Gene

SuperPathways for GC07M156563 Gene

No Data Available

Interacting Proteins for GC07M156563 Gene

Gene Ontology (GO) - Biological Process for GC07M156563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M156563 Gene

Drugs & Compounds for GC07M156563 Gene

No Compound Related Data Available

Transcripts for GC07M156563 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M156563 Gene

No ASD Table

Relevant External Links for GC07M156563 Gene

GeneLoc Exon Structure for
GC07M156563

No data available for mRNA/cDNA for GC07M156563 Gene

Expression for GC07M156563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M156563 Gene

Orthologs for GC07M156563 Gene

No data available for Orthologs and Evolution for GC07M156563 Gene

Paralogs for GC07M156563 Gene

No data available for Paralogs for GC07M156563 Gene

Variants for GC07M156563 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M156563 Gene

Disorders for GC07M156563 Gene

No disorders were found for GC07M156563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M156563 Gene

Publications for GC07M156563 Gene

  1. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S … Bozzoni I (Molecular and cellular biology 2002) 1
  2. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  3. Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana. (PMID: 12477388) Marker C … Hüttenhofer A (Current biology : CB 2002) 1
  4. A computational screen for methylation guide snoRNAs in yeast. (PMID: 10024243) Lowe TM … Eddy SR (Science (New York, N.Y.) 1999) 1

Products for GC07M156563 Gene

Sources for GC07M156563 Gene

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