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Aliases for GC07M140210 Gene

Subcategory (RNA class) for GC07M140210 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M140210 Gene

No Aliases found

ORGUL Members for GC07M140210 Gene

No data available for External Ids for GC07M140210 Gene

Summaries for GC07M140210 Gene

GeneCards Summary for GC07M140210 Gene

GC07M140210 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M140210 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

View fRNAdb secondary structures for GC07M140210

Additional gene information for GC07M140210 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M140210 Gene

Genomics for GC07M140210 Gene

Regulatory Elements for GC07M140210 Gene

Enhancers for GC07M140210 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H140209 1.9 VISTA Ensembl ENCODE dbSUPER 0.7 -2.8 -2771 5 PKNOX1 TBL1XR1 BMI1 BATF RFX5 ZNF143 FOS ATF7 ETV6 RUNX3 KDM7A JHDM1D-AS1 GC07M140210 RNU6-797P GC07P140221
GH07H140199 1.5 FANTOM5 Ensembl ENCODE 0.4 +9.3 9318 0 HDAC1 ATF1 RB1 SIN3A EGR1 SIRT6 FOS ATF7 CREM ZHX2 LUC7L2 UBN2 TBXAS1 KDM7A GC07M140210 RNU6-797P PIR48297
GH07H140220 0.6 ENCODE 0.4 -10.5 -10511 1 BCOR SMARCE1 TBL1XR1 ZMYM3 DPF2 CTBP1 KDM1A RCOR1 FOS KDM7A RNU1-58P JHDM1D-AS1 GC07P140221 RNU6-797P GC07M140210
GH07H140196 0.6 ENCODE 0.4 +12.8 12756 0 ZNF766 ATF1 ZNF512 ADNP TRIM24 MGA RNU1-58P GC07M140210 RNU6-797P PIR48297
GH07H140197 0.5 ENCODE 0.4 +12.3 12336 0 ZNF766 PKNOX1 L3MBTL2 TRIM24 MGA KDM7A RNU1-58P RNU6-797P GC07M140210 PIR48297
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M140210 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M140210 Gene

Chromosome:
7
Start:
140,209,562 bp from pter
End:
140,209,671 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for GC07M140210 Gene

Genes around GC07M140210 on UCSC Golden Path with GeneCards custom track

GC07M140210 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M140210 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07M140210 Gene

ORGUL Member Location for GC07M140210 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M140210 Gene

Proteins for GC07M140210 Gene

Post-translational modifications for GC07M140210 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M140210 Gene

Domains & Families for GC07M140210 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M140210 Gene

Function for GC07M140210 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M140210 Gene

Localization for GC07M140210 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M140210 Gene

Pathways & Interactions for GC07M140210 Gene

SuperPathways for GC07M140210 Gene

No Data Available

Interacting Proteins for GC07M140210 Gene

Gene Ontology (GO) - Biological Process for GC07M140210 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M140210 Gene

Drugs & Compounds for GC07M140210 Gene

No Compound Related Data Available

Transcripts for GC07M140210 Gene

fRNAdb Secondary structures for GC07M140210 Gene

  • FR025136
  • FR136185

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M140210 Gene

No ASD Table

Relevant External Links for GC07M140210 Gene

GeneLoc Exon Structure for
GC07M140210

No data available for mRNA/cDNA for GC07M140210 Gene

Expression for GC07M140210 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M140210 Gene

Orthologs for GC07M140210 Gene

No data available for Orthologs and Evolution for GC07M140210 Gene

Paralogs for GC07M140210 Gene

No data available for Paralogs for GC07M140210 Gene

Variants for GC07M140210 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M140210 Gene

Disorders for GC07M140210 Gene

No disorders were found for GC07M140210 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M140210 Gene

Publications for GC07M140210 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07M140210 Gene

Sources for GC07M140210 Gene

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