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Aliases for GC07M138188 Gene

Subcategory (RNA class) for GC07M138188 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07M138188 Gene

No Aliases found

ORGUL Members for GC07M138188 Gene

No data available for External Ids for GC07M138188 Gene

Summaries for GC07M138188 Gene

GeneCards Summary for GC07M138188 Gene

GC07M138188 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M138188 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M138188 Gene

Genomics for GC07M138188 Gene

Regulatory Elements for GC07M138188 Gene

Enhancers for GC07M138188 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G138185 1 Ensembl ENCODE 0.7 +1.0 1029 2.4 CBX3 JUN USF2 ZEB2 EP300 FOSL1 JUND ATF3 POLR2A MLLT1 TRIM24 GC07M138188 ENSG00000201465 ENSG00000252820
GH07G138196 1.1 Ensembl ENCODE 0.4 -8.9 -8872 2.0 HDAC1 CBX3 TBL1XR1 ZNF133 SIN3A RAD21 ZBTB40 TCF12 CBX5 FOS TRIM24 GC07M138188 ENSG00000201465 RPS17P12
GH07G138204 1.1 ENCODE dbSUPER 0.4 -17.1 -17108 2.0 ATF1 PKNOX1 ZBTB21 CREB3L1 FEZF1 ZNF384 CHD7 ETS1 ZNF316 POLR2A TRIM24 ENSG00000201465 GC07M138188 RPS17P12
GH07G138243 2 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -58.0 -57965 5.6 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 CBX5 ENSG00000201465 AKR1D1 TRIM24 RPS17P12 GC07M138188
GH07G138195 0.9 Ensembl ENCODE 0.4 -7.4 -7369 0.2 SOX13 GATAD2A PKNOX1 TEAD1 SP5 FOXA3 CEBPG EP300 FOXA1 ZNF217 ENSG00000201465 GC07M138188 RPS17P12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M138188 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M138188 Gene

Chromosome:
7
Start:
138,187,997 bp from pter
End:
138,188,129 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for GC07M138188 Gene

Genes around GC07M138188 on UCSC Golden Path with GeneCards custom track

GC07M138188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M138188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M138188 Gene

Proteins for GC07M138188 Gene

Post-translational modifications for GC07M138188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M138188 Gene

Domains & Families for GC07M138188 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M138188 Gene

Function for GC07M138188 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M138188 Gene

Localization for GC07M138188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M138188 Gene

Pathways & Interactions for GC07M138188 Gene

SuperPathways for GC07M138188 Gene

No Data Available

Interacting Proteins for GC07M138188 Gene

Gene Ontology (GO) - Biological Process for GC07M138188 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M138188 Gene

Drugs & Compounds for GC07M138188 Gene

No Compound Related Data Available

Transcripts for GC07M138188 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M138188 Gene

No ASD Table

Relevant External Links for GC07M138188 Gene

GeneLoc Exon Structure for
GC07M138188

No data available for mRNA/cDNA for GC07M138188 Gene

Expression for GC07M138188 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M138188 Gene

Orthologs for GC07M138188 Gene

No data available for Orthologs and Evolution for GC07M138188 Gene

Paralogs for GC07M138188 Gene

No data available for Paralogs for GC07M138188 Gene

Variants for GC07M138188 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M138188 Gene

Disorders for GC07M138188 Gene

No disorders were found for GC07M138188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M138188 Gene

Publications for GC07M138188 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 1

Products for GC07M138188 Gene

Sources for GC07M138188 Gene

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