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Aliases for GC07M132807 Gene

Subcategory (RNA class) for GC07M132807 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M132807 Gene

No Aliases found

ORGUL Members for GC07M132807 Gene

No data available for External Ids for GC07M132807 Gene

Summaries for GC07M132807 Gene

GeneCards Summary for GC07M132807 Gene

GC07M132807 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M132807 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M132807 Gene

Genomics for GC07M132807 Gene

Regulatory Elements for GC07M132807 Gene

Enhancers for GC07M132807 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G132815 0.7 ENCODE 0.4 -8.2 -8220 0.2 CTCF PKNOX1 RAD21 ZNF316 GATA2 ZSCAN29 ZMIZ1 NFE2 MAFK MAFG GC07M132807 ENSG00000227197
GH07G132770 0.8 Ensembl ENCODE 0.3 +36.4 36442 1.9 RAD51 SMARCA4 POLR2A ZNF341 ZNF548 RAD21 ENSG00000227197 GC07P132763 GC07M132807
GH07G132782 0.7 ENCODE 0.3 +24.1 24120 2.2 RFX1 JUN SIN3A EP300 JUND ZNF316 MAFF POLR2A STAT3 NFE2 LOC100506937 ENSG00000201009 GC07P132763 GC07M132807
GH07G132798 0.5 ENCODE 0.4 +8.8 8761 0.2 GATA2 PBX2 ZSCAN4 HMBOX1 GC07M132807 GC07P132763
GH07G132799 0.4 FANTOM5 0.4 +7.9 7933 0.1 ZNF341 LOC100506937 ENSG00000201009 GC07M132807 GC07P132763
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M132807 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M132807 Gene

Chromosome:
7
Start:
132,807,540 bp from pter
End:
132,807,695 bp from pter
Size:
156 bases
Orientation:
Minus strand

Genomic View for GC07M132807 Gene

Genes around GC07M132807 on UCSC Golden Path with GeneCards custom track

GC07M132807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M132807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M132807 Gene

Proteins for GC07M132807 Gene

Post-translational modifications for GC07M132807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M132807 Gene

Domains & Families for GC07M132807 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M132807 Gene

Function for GC07M132807 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M132807 Gene

Localization for GC07M132807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M132807 Gene

Pathways & Interactions for GC07M132807 Gene

SuperPathways for GC07M132807 Gene

No Data Available

Interacting Proteins for GC07M132807 Gene

Gene Ontology (GO) - Biological Process for GC07M132807 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M132807 Gene

Drugs & Compounds for GC07M132807 Gene

No Compound Related Data Available

Transcripts for GC07M132807 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M132807 Gene

No ASD Table

Relevant External Links for GC07M132807 Gene

GeneLoc Exon Structure for
GC07M132807

No data available for mRNA/cDNA for GC07M132807 Gene

Expression for GC07M132807 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M132807 Gene

Orthologs for GC07M132807 Gene

No data available for Orthologs and Evolution for GC07M132807 Gene

Paralogs for GC07M132807 Gene

No data available for Paralogs for GC07M132807 Gene

Variants for GC07M132807 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M132807 Gene

Disorders for GC07M132807 Gene

No disorders were found for GC07M132807 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M132807 Gene

Publications for GC07M132807 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund J.A. … Schultz S.C. (RNA 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby M.I. … Greenbaum N.L. (RNA 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC07M132807 Gene

Sources for GC07M132807 Gene

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