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Aliases for GC07M131055 Gene

Subcategory (RNA class) for GC07M131055 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M131055 Gene

No Aliases found

ORGUL Members for GC07M131055 Gene

No data available for External Ids for GC07M131055 Gene

Summaries for GC07M131055 Gene

GeneCards Summary for GC07M131055 Gene

GC07M131055 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M131055 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M131055 Gene

Genomics for GC07M131055 Gene

Regulatory Elements for GC07M131055 Gene

Enhancers for GC07M131055 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G131055 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.0 -1968 3.7 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 ZNF202 MXD4 PPARG RNU6-1010P GC07M131055 MKLN1
GH07G131071 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.4 -17416 2.0 PKNOX1 ATF1 CREB3L1 ARNT YY1 ELK1 GATA2 ZNF143 REST SMARCA4 GC07M131055 RNU6-1010P MKLN1
GH07G131051 0.9 FANTOM5 dbSUPER 0.7 +3.5 3487 0.7 RING1 CBX8 RNF2 CBX2 EZH2 MKLN1 LINC-PINT MIR29A ENSG00000270953 GC07M131055 RNU6-1010P GC07M130950
GH07G131068 1.5 Ensembl ENCODE dbSUPER 0.4 -14.3 -14349 1.3 PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 CBX5 ZNF143 GC07M131055 RNU6-1010P MKLN1
GH07G131006 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +44.6 44591 7.3 HDGF PKNOX1 ATF1 ARNT SIN3A ZNF2 ZNF766 GLIS2 ELK1 FOS RNU6-1010P LINC-PINT MIR29A KLHDC10 MKLN1 GC07M131055 GC07M130950
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M131055 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M131055 Gene

Chromosome:
7
Start:
131,054,885 bp from pter
End:
131,054,992 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC07M131055 Gene

Genes around GC07M131055 on UCSC Golden Path with GeneCards custom track

GC07M131055 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M131055 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M131055 Gene

Proteins for GC07M131055 Gene

Post-translational modifications for GC07M131055 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M131055 Gene

Domains & Families for GC07M131055 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M131055 Gene

Function for GC07M131055 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M131055 Gene

Localization for GC07M131055 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M131055 Gene

Pathways & Interactions for GC07M131055 Gene

SuperPathways for GC07M131055 Gene

No Data Available

Interacting Proteins for GC07M131055 Gene

Gene Ontology (GO) - Biological Process for GC07M131055 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M131055 Gene

Drugs & Compounds for GC07M131055 Gene

No Compound Related Data Available

Transcripts for GC07M131055 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M131055 Gene

No ASD Table

Relevant External Links for GC07M131055 Gene

GeneLoc Exon Structure for
GC07M131055

No data available for mRNA/cDNA for GC07M131055 Gene

Expression for GC07M131055 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M131055 Gene

Orthologs for GC07M131055 Gene

No data available for Orthologs and Evolution for GC07M131055 Gene

Paralogs for GC07M131055 Gene

No data available for Paralogs for GC07M131055 Gene

Variants for GC07M131055 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M131055 Gene

Disorders for GC07M131055 Gene

No disorders were found for GC07M131055 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M131055 Gene

Publications for GC07M131055 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H. … Engberg J. (J. Mol. Biol. 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J. … Blumenthal T. (Nucleic Acids Res. 1990) 1

Products for GC07M131055 Gene

Sources for GC07M131055 Gene

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