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Aliases for GC07M121084 Gene

Subcategory (RNA class) for GC07M121084 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC07M121084 Gene

No Aliases found

ORGUL Members for GC07M121084 Gene

No data available for External Ids for GC07M121084 Gene

Summaries for GC07M121084 Gene

GeneCards Summary for GC07M121084 Gene

GC07M121084 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC07M121084 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC07M121084 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M121084 Gene

Genomics for GC07M121084 Gene

Regulatory Elements for GC07M121084 Gene

Enhancers for GC07M121084 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H121081 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -0.8 -794 6 HDAC1 HNRNPUL1 HDGF FOXA2 PKNOX1 ATF1 RB1 ARNT NFXL1 ZNF2 CPED1 ING3 RNA5SP241 GC07M121084 GC07P121089
GH07H121077 1 dbSUPER 0.7 +4.7 4656 2 HDGF PKNOX1 ARNT YY1 ZNF766 ATF7 REST ZNF592 SMARCA4 ZNF184 CPED1 ING3 GC07M121084 RNA5SP241 HMGN1P18
GH07H121075 1.5 Ensembl ENCODE dbSUPER 0.4 +7.1 7101 1 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 FOS ATF7 GTF2B CPED1 ING3 RNA5SP241 GC07M121084 HMGN1P18
GH07H121072 0.8 dbSUPER 0.4 +10.6 10624 1 BRD4 SOX13 FOXA2 PKNOX1 MAX CEBPG RAD21 YY1 HNF4G SOX5 CPED1 ING3 TSPAN12 RNA5SP241 GC07M121084 HMGN1P18
GH07H121070 0.7 dbSUPER 0.4 +12.3 12291 1 LEF1 TBL1XR1 BACH1 ZNF175 CEBPG CHAMP1 FOSL1 ATF7 SMARCE1 ZNF197 CPED1 FAM3C RNA5SP241 GC07M121084 HMGN1P18
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M121084 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M121084 Gene

Chromosome:
7
Start:
121,083,699 bp from pter
End:
121,083,813 bp from pter
Size:
115 bases
Orientation:
Minus strand

Genomic View for GC07M121084 Gene

Genes around GC07M121084 on UCSC Golden Path with GeneCards custom track

GC07M121084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M121084 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M121084 Gene

Proteins for GC07M121084 Gene

Post-translational modifications for GC07M121084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M121084 Gene

Domains & Families for GC07M121084 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M121084 Gene

Function for GC07M121084 Gene

Phenotypes From GWAS Catalog for GC07M121084 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M121084 Gene

Localization for GC07M121084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M121084 Gene

Pathways & Interactions for GC07M121084 Gene

SuperPathways for GC07M121084 Gene

No Data Available

Interacting Proteins for GC07M121084 Gene

Gene Ontology (GO) - Biological Process for GC07M121084 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M121084 Gene

Drugs & Compounds for GC07M121084 Gene

No Compound Related Data Available

Transcripts for GC07M121084 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M121084 Gene

No ASD Table

Relevant External Links for GC07M121084 Gene

GeneLoc Exon Structure for
GC07M121084

No data available for mRNA/cDNA for GC07M121084 Gene

Expression for GC07M121084 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M121084 Gene

Orthologs for GC07M121084 Gene

No data available for Orthologs and Evolution for GC07M121084 Gene

Paralogs for GC07M121084 Gene

No data available for Paralogs for GC07M121084 Gene

Variants for GC07M121084 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M121084 Gene

Disorders for GC07M121084 Gene

No disorders were found for GC07M121084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M121084 Gene

Publications for GC07M121084 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC07M121084 Gene

Sources for GC07M121084 Gene

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