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Aliases for GC07M120007 Gene

Subcategory (RNA class) for GC07M120007 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M120007 Gene

No Aliases found

ORGUL Members for GC07M120007 Gene

No data available for External Ids for GC07M120007 Gene

Summaries for GC07M120007 Gene

GeneCards Summary for GC07M120007 Gene

GC07M120007 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M120007 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

View fRNAdb secondary structures for GC07M120007

Additional gene information for GC07M120007 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M120007 Gene

Genomics for GC07M120007 Gene

GeneHancer (GH) Regulatory Elements for GC07M120007 Gene

Promoters and enhancers for GC07M120007 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I119964 Enhancer 0.8 ENCODE 0.3 +41.0 41025 1.5 HDAC1 TAF9B NCOA2 CHAMP1 TCF12 ZBTB2 CEBPB ZNF592 MBD2 NFIC RNU1-29P GC07M120007 LINC02476
GH07I120014 Enhancer 0.2 ENCODE 0.4 -8.8 -8831 1.3 CPED1 RNU1-29P GC07M120007 GC07P120049
GH07I120033 Enhancer 0.2 ENCODE 0.3 -27.2 -27171 0.2 GC07P120049 RNU1-29P GC07M120007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M120007 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M120007 Gene

Genomic Locations for GC07M120007 Gene
chr7:120,005,933-120,006,101
(GRCh38/hg38)
Size:
169 bases
Orientation:
Minus strand

Genomic View for GC07M120007 Gene

Genes around GC07M120007 on UCSC Golden Path with GeneCards custom track

GC07M120007 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M120007 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07M120007 Gene

ORGUL Member Location for GC07M120007 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M120007 Gene

Proteins for GC07M120007 Gene

Post-translational modifications for GC07M120007 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M120007 Gene

Domains & Families for GC07M120007 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M120007 Gene

Function for GC07M120007 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M120007 Gene

Localization for GC07M120007 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M120007 Gene

Pathways & Interactions for GC07M120007 Gene

SuperPathways for GC07M120007 Gene

No Data Available

Interacting Proteins for GC07M120007 Gene

Gene Ontology (GO) - Biological Process for GC07M120007 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M120007 Gene

Drugs & Compounds for GC07M120007 Gene

No Compound Related Data Available

Transcripts for GC07M120007 Gene

fRNAdb Secondary structures for GC07M120007 Gene

  • FR355862
  • FR244586

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M120007 Gene

No ASD Table

Relevant External Links for GC07M120007 Gene

GeneLoc Exon Structure for
GC07M120007

No data available for mRNA/cDNA for GC07M120007 Gene

Expression for GC07M120007 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M120007 Gene

Orthologs for GC07M120007 Gene

No data available for Orthologs and Evolution for GC07M120007 Gene

Paralogs for GC07M120007 Gene

No data available for Paralogs for GC07M120007 Gene

Variants for GC07M120007 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M120007 Gene

Disorders for GC07M120007 Gene

No disorders were found for GC07M120007 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M120007 Gene

Publications for GC07M120007 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  5. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1

Products for GC07M120007 Gene

Sources for GC07M120007 Gene

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