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Aliases for GC07M108000 Gene

Subcategory (RNA class) for GC07M108000 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07M108000 Gene

No Aliases found

ORGUL Members for GC07M108000 Gene

No data available for External Ids for GC07M108000 Gene

Summaries for GC07M108000 Gene

GeneCards Summary for GC07M108000 Gene

GC07M108000 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M108000 Gene

  • U3_snoRNA: U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M108000 Gene

Genomics for GC07M108000 Gene

Regulatory Elements for GC07M108000 Gene

Enhancers for GC07M108000 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G107993 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +0.5 475 12.1 PKNOX1 FOXA2 AGO1 ARID4B SIN3A FEZF1 YY1 FOS ZNF263 SP3 LAMB1 LAMB4 ENSG00000238297 GC07M108000 GC07M107805
GH07G107971 1.5 Ensembl ENCODE dbSUPER 0.3 +27.6 27604 2.7 PKNOX1 FOXA2 ATF1 ARID4B SIN3A FEZF1 DMAP1 YY1 TCF12 ZNF766 LAMB1 ENSG00000238297 GC07M107805 GC07M108000
GH07G107966 1.1 ENCODE dbSUPER 0.3 +32.8 32773 2.0 ELF3 PKNOX1 FOXA2 ATF1 ARID4B DNMT3B RAD21 RARA CREM MIXL1 LAMB1 ENSG00000238297 GC07M107805 GC07M108000
GH07G107982 0.8 ENCODE dbSUPER 0.4 +17.0 16981 1.1 CTCF CEBPB CEBPG RAD21 NR2F2 NR2C2 LAMB1 ENSG00000238297 GC07M108000 GC07M107805
GH07G107989 0.7 ENCODE dbSUPER 0.4 +10.1 10148 0.3 ZNF121 ZNF600 FOS LAMB4 ENSG00000238297 GC07M108000 GC07M107805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M108000 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M108000 Gene

Chromosome:
7
Start:
107,999,791 bp from pter
End:
107,999,982 bp from pter
Size:
192 bases
Orientation:
Minus strand

Genomic View for GC07M108000 Gene

Genes around GC07M108000 on UCSC Golden Path with GeneCards custom track

GC07M108000 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M108000 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M108000 Gene

Proteins for GC07M108000 Gene

Post-translational modifications for GC07M108000 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M108000 Gene

Domains & Families for GC07M108000 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M108000 Gene

Function for GC07M108000 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M108000 Gene

Localization for GC07M108000 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC07M108000 Gene

Pathways & Interactions for GC07M108000 Gene

SuperPathways for GC07M108000 Gene

No Data Available

Interacting Proteins for GC07M108000 Gene

Gene Ontology (GO) - Biological Process for GC07M108000 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M108000 Gene

Drugs & Compounds for GC07M108000 Gene

No Compound Related Data Available

Transcripts for GC07M108000 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M108000 Gene

No ASD Table

Relevant External Links for GC07M108000 Gene

GeneLoc Exon Structure for
GC07M108000

No data available for mRNA/cDNA for GC07M108000 Gene

Expression for GC07M108000 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M108000 Gene

Orthologs for GC07M108000 Gene

No data available for Orthologs and Evolution for GC07M108000 Gene

Paralogs for GC07M108000 Gene

No data available for Paralogs for GC07M108000 Gene

Variants for GC07M108000 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M108000 Gene

Disorders for GC07M108000 Gene

No disorders were found for GC07M108000 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M108000 Gene

Publications for GC07M108000 Gene

  1. Nuclear retention elements of U3 small nucleolar RNA. (PMID: 10567566) Speckmann W. … Terns M.P. (Mol. Cell. Biol. 1999) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C. (Nucleic Acids Res. 1997) 1

Products for GC07M108000 Gene

Sources for GC07M108000 Gene

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