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Aliases for GC07M088450 Gene

Subcategory (RNA class) for GC07M088450 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for GC07M088450 Gene

No Aliases found

ORGUL Members for GC07M088450 Gene

No data available for External Ids for GC07M088450 Gene

Summaries for GC07M088450 Gene

GeneCards Summary for GC07M088450 Gene

GC07M088450 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC07M088450 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC07M088450 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M088450 Gene

Genomics for GC07M088450 Gene

Regulatory Elements for GC07M088450 Gene

Enhancers for GC07M088450 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H088452 0.4 ENCODE 0.7 -3.6 -3626 1 IKZF1 ENSG00000270812 GC07M088450 ENSG00000207094
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M088450 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M088450 Gene

Chromosome:
7
Start:
88,449,091 bp from pter
End:
88,449,231 bp from pter
Size:
141 bases
Orientation:
Minus strand

Genomic View for GC07M088450 Gene

Genes around GC07M088450 on UCSC Golden Path with GeneCards custom track

GC07M088450 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M088450 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M088450 Gene

Proteins for GC07M088450 Gene

Post-translational modifications for GC07M088450 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M088450 Gene

Domains & Families for GC07M088450 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M088450 Gene

Function for GC07M088450 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M088450 Gene

Localization for GC07M088450 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M088450 Gene

Pathways & Interactions for GC07M088450 Gene

SuperPathways for GC07M088450 Gene

No Data Available

Interacting Proteins for GC07M088450 Gene

Gene Ontology (GO) - Biological Process for GC07M088450 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M088450 Gene

Drugs & Compounds for GC07M088450 Gene

No Compound Related Data Available

Transcripts for GC07M088450 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M088450 Gene

No ASD Table

Relevant External Links for GC07M088450 Gene

GeneLoc Exon Structure for
GC07M088450

No data available for mRNA/cDNA for GC07M088450 Gene

Expression for GC07M088450 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M088450 Gene

Orthologs for GC07M088450 Gene

No data available for Orthologs and Evolution for GC07M088450 Gene

Paralogs for GC07M088450 Gene

No data available for Paralogs for GC07M088450 Gene

Variants for GC07M088450 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M088450 Gene

Disorders for GC07M088450 Gene

No disorders were found for GC07M088450 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M088450 Gene

Publications for GC07M088450 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  3. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1
  4. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1

Products for GC07M088450 Gene

Sources for GC07M088450 Gene

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