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Aliases for GC07M079344 Gene

Subcategory (RNA class) for GC07M079344 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC07M079344 Gene

No Aliases found

ORGUL Members for GC07M079344 Gene

No data available for External Ids for GC07M079344 Gene

Summaries for GC07M079344 Gene

GeneCards Summary for GC07M079344 Gene

GC07M079344 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC07M079344 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

View fRNAdb secondary structures for GC07M079344

Additional gene information for GC07M079344 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M079344 Gene

Genomics for GC07M079344 Gene

Regulatory Elements for GC07M079344 Gene

Enhancers for GC07M079344 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H079317 1.4 FANTOM5 Ensembl ENCODE 0.3 +25.6 25591 1 ELF3 PKNOX1 FOXA2 ZEB1 ZNF366 FOS MIXL1 TSHZ1 ZEB2 PPARG MAGI2-AS3 MAGI2 RNU6-530P GC07M079344 GC07M079259
GH07H079280 1.2 FANTOM5 Ensembl ENCODE 0.2 +60.6 60633 4 CTCF JUN CEBPB MAFG BACH1 CEBPG EP300 RAD21 MAFF JUND MAGI2-AS3 MAGI2 GC07M079259 GC07M079344 RNU6-530P
GH07H079290 1.1 FANTOM5 ENCODE 0.2 +50.9 50860 4 SOX13 FOXA2 CHD4 GATA3 RERE FOS ATF7 EGR2 GATAD2A FOXA3 MAGI2-AS3 MAGI2 GC07M079259 RNU6-530P GC07M079344
GH07H079295 0.4 ENCODE 0.2 +46.3 46329 2 CTCF RAD21 GC07M079259 RNU6-530P GC07M079344
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M079344 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M079344 Gene

Chromosome:
7
Start:
79,343,265 bp from pter
End:
79,343,372 bp from pter
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC07M079344 Gene

Genes around GC07M079344 on UCSC Golden Path with GeneCards custom track

GC07M079344 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M079344 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07M079344 Gene

ORGUL Member Location for GC07M079344 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M079344 Gene

Proteins for GC07M079344 Gene

Post-translational modifications for GC07M079344 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M079344 Gene

Domains & Families for GC07M079344 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M079344 Gene

Function for GC07M079344 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M079344 Gene

Localization for GC07M079344 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M079344 Gene

Pathways & Interactions for GC07M079344 Gene

SuperPathways for GC07M079344 Gene

No Data Available

Interacting Proteins for GC07M079344 Gene

Gene Ontology (GO) - Biological Process for GC07M079344 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M079344 Gene

Drugs & Compounds for GC07M079344 Gene

No Compound Related Data Available

Transcripts for GC07M079344 Gene

fRNAdb Secondary structures for GC07M079344 Gene

  • FR348975
  • FR130443

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M079344 Gene

No ASD Table

Relevant External Links for GC07M079344 Gene

GeneLoc Exon Structure for
GC07M079344

No data available for mRNA/cDNA for GC07M079344 Gene

Expression for GC07M079344 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M079344 Gene

Orthologs for GC07M079344 Gene

No data available for Orthologs and Evolution for GC07M079344 Gene

Paralogs for GC07M079344 Gene

No data available for Paralogs for GC07M079344 Gene

Variants for GC07M079344 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M079344 Gene

Disorders for GC07M079344 Gene

No disorders were found for GC07M079344 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M079344 Gene

Publications for GC07M079344 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. (PMID: 8797828) Balakin AG … Fournier MJ (Cell 1996) 1
  4. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  5. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC07M079344 Gene

Sources for GC07M079344 Gene

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