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Aliases for GC07M074488 Gene

Subcategory (RNA class) for GC07M074488 Gene

rRNA

Quality Score for this RNA gene is

2

Aliases for GC07M074488 Gene

No Aliases found

ORGUL Members for GC07M074488 Gene

No data available for External Ids for GC07M074488 Gene

Summaries for GC07M074488 Gene

GeneCards Summary for GC07M074488 Gene

GC07M074488 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC07M074488 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC07M074488 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M074488 Gene

Genomics for GC07M074488 Gene

GeneHancer (GH) Regulatory Elements for GC07M074488 Gene

Promoters and enhancers for GC07M074488 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I074485 Enhancer 0.3 dbSUPER 550.8 +1.1 1114 1 EGR1 GC07M074488 RNA5SP233 GTF2IRD1 GC07M074406
GH07I074451 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +33.1 33135 6 PKNOX1 DMAP1 SLC30A9 ZNF766 FOS DEK SP3 SP5 NFYC MXD4 GTF2IRD1 LAT2 GC07M074488 RNA5SP233 GC07M074406
GH07I074472 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.7 8719 11.6 PKNOX1 CLOCK ARID4B NEUROD1 SIN3A FEZF1 YY1 ZNF766 FOS REST GTF2IRD1 GC07M074488 RNA5SP233 GC07M074406
GH07I074501 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -14.6 -14646 2.2 BCOR FOXA2 RXRA PYGO2 REST RAD21 YY1 ZNF121 ZKSCAN8 SCRT2 GTF2IRD1 GC07M074488 RNA5SP233 GC07M074406
GH07I074462 Enhancer 1 ENCODE dbSUPER 0.3 +22.2 22233 6.4 ZSCAN4 NFXL1 BATF ZBTB7B ZNF121 GLIS2 FOS SMARCA5 GATAD2B SREBF1 GTF2IRD1 RNA5SP233 GC07M074488 GC07M074406
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC07M074488 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC07M074488 Gene

Genomic Locations for GC07M074488 Gene
chr7:74,487,427-74,487,540
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand

Genomic View for GC07M074488 Gene

Genes around GC07M074488 on UCSC Golden Path with GeneCards custom track

GC07M074488 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M074488 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M074488 Gene

Proteins for GC07M074488 Gene

Post-translational modifications for GC07M074488 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M074488 Gene

Domains & Families for GC07M074488 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M074488 Gene

Function for GC07M074488 Gene

Phenotypes From GWAS Catalog for GC07M074488 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M074488 Gene

Localization for GC07M074488 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M074488 Gene

Pathways & Interactions for GC07M074488 Gene

SuperPathways for GC07M074488 Gene

No Data Available

Interacting Proteins for GC07M074488 Gene

Gene Ontology (GO) - Biological Process for GC07M074488 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M074488 Gene

Drugs & Compounds for GC07M074488 Gene

No Compound Related Data Available

Transcripts for GC07M074488 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M074488 Gene

No ASD Table

Relevant External Links for GC07M074488 Gene

GeneLoc Exon Structure for
GC07M074488

No data available for mRNA/cDNA for GC07M074488 Gene

Expression for GC07M074488 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M074488 Gene

Orthologs for GC07M074488 Gene

No data available for Orthologs and Evolution for GC07M074488 Gene

Paralogs for GC07M074488 Gene

No data available for Paralogs for GC07M074488 Gene

Variants for GC07M074488 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC07M074488 Gene

Disorders for GC07M074488 Gene

No disorders were found for GC07M074488 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M074488 Gene

Publications for GC07M074488 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC07M074488 Gene

Sources for GC07M074488 Gene

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