Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC07M071688 Gene

Subcategory (RNA class) for GC07M071688 Gene

7SK RNA

Quality Score for this RNA gene is

2

Aliases for GC07M071688 Gene

No Aliases found

ORGUL Members for GC07M071688 Gene

No data available for External Ids for GC07M071688 Gene

Summaries for GC07M071688 Gene

GeneCards Summary for GC07M071688 Gene

GC07M071688 is an RNA Gene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for GC07M071688 Gene

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

View fRNAdb secondary structures for GC07M071688

Additional gene information for GC07M071688 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC07M071688 Gene

Genomics for GC07M071688 Gene

Regulatory Elements for GC07M071688 Gene

Enhancers for GC07M071688 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H071682 0.7 Ensembl ENCODE 0.7 +2.8 2805 1 MAX REST EZH2 GC07M071688 RN7SKP75 GC07M071606
GH07H071732 1 Ensembl ENCODE 0.2 -47.6 -47580 0 CTCF TFAP4 RB1 ZIC2 RAD21 E2F1 SCRT2 SMC3 ZNF143 SMARCA5 PIR50574 RN7SKP75 GC07M071688
GH07H071636 0.8 ENCODE 0.2 +49.1 49131 0 BCOR ZNF175 ZMYM3 PYGO2 IRF9 NFE2 ZNF584 ZNF639 CAVIN1 ZNF740 GC07M071606 RN7SKP75 GC07M071688
GH07H071632 0.8 Ensembl ENCODE 0.2 +52.2 52231 2 FOSL1 TFAP4 JUND ETV4 FOS TEAD3 GC07M071606 RN7SKP75 GC07M071688
GH07H071651 0.4 ENCODE 0.3 +33.3 33331 1 POU5F1 GC07M071606 GC07M071688 RN7SKP75
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC07M071688 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC07M071688 Gene

Chromosome:
7
Start:
71,685,451 bp from pter
End:
71,685,747 bp from pter
Size:
297 bases
Orientation:
Minus strand

Genomic View for GC07M071688 Gene

Genes around GC07M071688 on UCSC Golden Path with GeneCards custom track

GC07M071688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC07M071688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC07M071688 Gene

ORGUL Member Location for GC07M071688 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC07M071688 Gene

Proteins for GC07M071688 Gene

Post-translational modifications for GC07M071688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC07M071688 Gene

Domains & Families for GC07M071688 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC07M071688 Gene

Function for GC07M071688 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC07M071688 Gene

Localization for GC07M071688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC07M071688 Gene

Pathways & Interactions for GC07M071688 Gene

SuperPathways for GC07M071688 Gene

No Data Available

Interacting Proteins for GC07M071688 Gene

Gene Ontology (GO) - Biological Process for GC07M071688 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC07M071688 Gene

Drugs & Compounds for GC07M071688 Gene

No Compound Related Data Available

Transcripts for GC07M071688 Gene

fRNAdb Secondary structures for GC07M071688 Gene

  • FR156889
  • FR017009

Alternative Splicing Database (ASD) splice patterns (SP) for GC07M071688 Gene

No ASD Table

Relevant External Links for GC07M071688 Gene

GeneLoc Exon Structure for
GC07M071688

No data available for mRNA/cDNA for GC07M071688 Gene

Expression for GC07M071688 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC07M071688 Gene

Orthologs for GC07M071688 Gene

No data available for Orthologs and Evolution for GC07M071688 Gene

Paralogs for GC07M071688 Gene

No data available for Paralogs for GC07M071688 Gene

Variants for GC07M071688 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC07M071688 Gene

Disorders for GC07M071688 Gene

No disorders were found for GC07M071688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC07M071688 Gene

Publications for GC07M071688 Gene

  1. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  2. Transcription: surprising role for an elusive small nuclear RNA. (PMID: 11864590) Blencowe BJ (Current biology : CB 2002) 1
  3. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. (PMID: 1646389) Wassarman DA … Steitz JA (Molecular and cellular biology 1991) 1

Products for GC07M071688 Gene

Sources for GC07M071688 Gene

Content
Loading form....